Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1353 ATGGACTTAAACTACCCAGAAGAGTGCTACTCCAAGAGCTCAAGCGAAGAAACCAACGATGATATGGGAATTGGAAGATCCTATGAGTGCATCTATTGCAAGAGAGGCTTCACCACAGCCCAAGCCTTAGGTGGACACATGAACATACACAGAAAAGAAAGGGCAAACAAGACCAAACCCAGTTTCCAACCTCCTTCTTCGAGTTCAAACAACGTTGATGACATCAACAACTATGCAGATCTCGGGTTCTATTCACAGATTCCAAGCCTCTCATCCACTGCTCCTATTGATGCTAATAGCTACCGTGAAGTTTTCTTTCCTACTACCACTGCATCAAGTGTTAGGCCTTCTTCCCATGGTGAGGTTTTGTGTGTGGAAAACCAACGGGGTCATCACGTGTTTGAGCAAGATTGGAGGAAGAGAAATTTGAGCTTGTACAGTACTAATCCGTTGTGTTTTCATGAAATTAAAGATAAGTTTGAAGAGAGTGAAGAGAATGGCCTGGATTTGGAGCTGAGGCTTGGTTATCTTCCATAG 537 0.4358 MDLNYPEECYSKSSSEETNDDMGIGRSYECIYCKRGFTTAQALGGHMNIHRKERANKTKPSFQPPSSSSNNVDDINNYADLGFYSQIPSLSSTAPIDANSYREVFFPTTTASSVRPSSHGEVLCVENQRGHHVFEQDWRKRNLSLYSTNPLCFHEIKDKFEESEENGLDLELRLGYLP* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1353 178 Gene3D Classic Zinc Finger 11 79 - -
Gso3g1353 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Gso3g1353 178 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 13 178 - -
Gso3g1353 178 MobiDBLite consensus disorder prediction 1 20 - -
Gso3g1353 178 Pfam C2H2-type zinc finger 28 53 - -
Gso3g1353 178 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Gso3g1353 178 PANTHER OS07G0101800 PROTEIN 13 178 - -
Gso3g1353 178 SUPERFAMILY beta-beta-alpha zinc fingers 26 55 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1353 Gso-Chr3 39459127 39460364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1353 28 90 C2H2 Transcription Factor Family AT5G43540 50.794 1.90e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1353 zf-C2H2_6 5.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1353 - - gmx:102665426 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1352 19 42255377 42256577 Gso3g1353 3 39459127 39460364 GST
Gso3g1353 3 39459127 39460364 Gso10g0291 10 3119851 3120993 PCT
Gso10g0291 10 3119851 3120993 Gso3g1353 3 39459127 39460364 PCT