Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1352 ATGGAAGGAAACTTTCTGACAAGAAACAGGTTTGGGTTTGAGGAGCATTCATGGCCTACTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCTTTGGGTGGTCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCTTGCTTACCCCCGTCATCATGGGTTTCTGAGTGTCCTAATAAACCTAACTCCATTAAGCCTAATCCAACTCATCTTTCACCTTCATCTCCATCATCATTATGTCTATCTAATAACCTTTTGAATTGTGCTCATACTTTTCCACTTTATAGCCCTTCTTTGACTTTGTCATCTTCACTGACTCCAGCTTCTCCCAATGGAGACAATAAACCAAGAAGAGTATCTCCGGATCCACATCTTCTTCCTCTTTTGATTCCTCAAAGCAGTGAGGAAATTAAGATGAATAAGAATAAAGTAAGTGGTTTAGGAGTTGAAGAAGTACAGGGTTGTGCAATAGGGGAGAAACTCAAGGTTTTCAAGACTAGTACTAGTGAGCATAACATCAAGCTGGAGTTGGGAATAGGGTTGCTTAAACAACCAGAGATGTTAGATTTGGAGCTACGATTGGGGCACAGCTAG 618 0.411 MEGNFLTRNRFGFEEHSWPTRNYACSFCKREFKSAQALGGHMNVHRRDRARLRSCLPPSSWVSECPNKPNSIKPNPTHLSPSSPSSLCLSNNLLNCAHTFPLYSPSLTLSSSLTPASPNGDNKPRRVSPDPHLLPLLIPQSSEEIKMNKNKVSGLGVEEVQGCAIGEKLKVFKTSTSEHNIKLELGIGLLKQPEMLDLELRLGHS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1352 205 SUPERFAMILY beta-beta-alpha zinc fingers 20 49 IPR036236 -
Gso3g1352 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Gso3g1352 205 Pfam C2H2-type zinc finger 23 47 - -
Gso3g1352 205 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Gso3g1352 205 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 15 204 - -
Gso3g1352 205 PANTHER OS07G0101800 PROTEIN 15 204 - -
Gso3g1352 205 Gene3D Classic Zinc Finger 10 58 - -
Gso3g1352 205 SMART c2h2final6 23 45 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1352 Gso-Chr3 39444539 39445752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1352 17 205 C2H2 Transcription Factor Family AT3G23130 39.267 9.00e-21 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1352 zf-C2H2_6 6.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1352 - - gmx:102666850 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1351 19 42245537 42246729 Gso3g1352 3 39444539 39445752 GST
Gso3g1352 3 39444539 39445752 Gso10g0290 10 3110289 3111551 PCT
Gso10g0290 10 3110289 3111551 Gso3g1352 3 39444539 39445752 PCT