Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1345 ATGCCTGTTCACGCGCTTCCATTTTCAAAGGACTCTCCGCCGCCCAAACCCAAGGAGGCTCATTTCCGGGGTGTCCGCAAGCGTCCCTGGGGCCGCTTTGCCGCTGAGATCCGTGACCCCTGGAAAAAGACCCGAAAGTGGCTCGGCACCTTTGACACTGCCGAGGAAGCCGCCAGGGCTTATGACGCCGCCGCCAGAACACTCCGTGGGCCCAAGGCCAAGACCAACTTCTCCTACATCCTTGCTCCCGCTTTCCACCTCCCTCCCCCGGTGCTCACTACTCCCGAAGCCCATGCCCTGGCCCAAGCCCAAGCCCAGGAACAACTCGCCAGACAGGTCGAGTTCTGTGGCCCACCGTTTTTCTTTGCAACTGATGTAGCTTCCACCGCGCCGGTGAGGTCGGAGTACAAGGGTTACAAGTTAGAGAATATCGCGGGTTTTGTGGTGAGTAAGGAGGAGCAGAAAGAGAAAAATAAGCCCTTCTTATTTGACCTTAACCTGCCGGCGCCGCTCTTCTGA 519 0.5819 MPVHALPFSKDSPPPKPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDAAARTLRGPKAKTNFSYILAPAFHLPPPVLTTPEAHALAQAQAQEQLARQVEFCGPPFFFATDVASTAPVRSEYKGYKLENIAGFVVSKEEQKEKNKPFLFDLNLPAPLF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1345 172 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Gso3g1345 172 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Gso3g1345 172 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Gso3g1345 172 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Gso3g1345 172 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Gso3g1345 172 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 114 - -
Gso3g1345 172 MobiDBLite consensus disorder prediction 1 25 - -
Gso3g1345 172 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Gso3g1345 172 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Gso3g1345 172 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Gso3g1345 172 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1345 Gso-Chr3 39344143 39345038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1345 18 77 AP2-EREBP Transcription Factor Family AT1G50640 88.333 6.85e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g1345 AP2 5.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1345 K09286 - gmx:100816599 325.479