Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1343 ATGCAGCAGCAGGGAGTGAGTGCGAGCGAGGAGGGAAGGAGAAGCAGCATGTCGAATCAGGTGGTCAAAGTGCGAAGGAACACAATTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTACGGATGAGGAGATAGAATGTTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCGCTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGGAGAAAGGTGAAGGCACCTGAAGTTGTCACCTCAGTACCATTACCGGCTAGGAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCAAGGGTATCTACACAAGCAGCTATGACGGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGTCTGCGATCCACTAGTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAAGATTTGCTGGAAGATCGTCCTGATAGTTCAAGTTCGCCTGACACTTCATATAAGTTTGCTCAGAATTCTGGACAGAGTATCTCTCCTTGTGAGGGTAGTCAATCCATACCAAATAAAGGATCAGAGAATGGTGCCGAACCATGGGATGCAAAATTGGATCTTTGGAAACCTTTGAATTTCTTAGTAGAGGTTGCAAGTAGGAGTAAATCTTTCAAGTCGAATAATGTGCAAGGGTCTGATGCTAAATTAGAAACCAATCAAGTAAATGAGAGTGATTCTCAAGTTCAGAAAACCAAAAATAAGGAAAATAAACGTAAGGCAAAAATTGAAGATGAAAAGAGTAGCCCTTATCCTGTCTCTTCAGATACAGCAAAACCAAATAAATTGCGCAGAATACGCAAGAAAAAGGAGACTGCTTCTGGAGAATCTGGCATATCACCCCAAGCTGTGCTGGATTCTGCCAGCAATAGACTCTCAAGGACTGGTCCAATTTGGTTCTCCTTAGTGGCTTCTGAAAACCAGGAAGGAGATGCTCCCTTGCCTCAAATTCCTGCAAGTTATTTGAGAATAAAGGATGGTAGCATATCAGTTTCGTTCATCCAAAAATATCTAATGAAGAAACTGGATTTGACCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACATTGCAGCTATATAACTTGGTTGAGTTGTGGCTGGATATGGCGTCCACGCCACAGAGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTCCTGGCTTATGGTCGGAAGGTTCCACACACTTGA 1338 0.4327 MQQQGVSASEEGRRSSMSNQVVKVRRNTIVACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEEIECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSTQAAMTGRRTKPTRKASGLRSTSFSIEKPIKKEEDLLEDRPDSSSSPDTSYKFAQNSGQSISPCEGSQSIPNKGSENGAEPWDAKLDLWKPLNFLVEVASRSKSFKSNNVQGSDAKLETNQVNESDSQVQKTKNKENKRKAKIEDEKSSPYPVSSDTAKPNKLRRIRKKKETASGESGISPQAVLDSASNRLSRTGPIWFSLVASENQEGDAPLPQIPASYLRIKDGSISVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLQLYNLVELWLDMASTPQRIPATIGSSAKDFVMVLAYGRKVPHT* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1343 445 Pfam Zinc finger, C3HC4 type (RING finger) 35 75 - -
Gso3g1343 445 MobiDBLite consensus disorder prediction 268 288 - -
Gso3g1343 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 127 IPR013083 -
Gso3g1343 445 SMART ring_2 35 75 IPR001841 -
Gso3g1343 445 MobiDBLite consensus disorder prediction 128 147 - -
Gso3g1343 445 MobiDBLite consensus disorder prediction 243 267 - -
Gso3g1343 445 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 18 441 IPR044807 GO:0004842
Gso3g1343 445 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 18 441 - -
Gso3g1343 445 ProSiteProfiles Zinc finger RING-type profile. 35 76 IPR001841 -
Gso3g1343 445 SUPERFAMILY RING/U-box 29 99 - -
Gso3g1343 445 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Gso3g1343 445 MobiDBLite consensus disorder prediction 243 320 - -
Gso3g1343 445 MobiDBLite consensus disorder prediction 182 214 - -
Gso3g1343 445 MobiDBLite consensus disorder prediction 165 181 - -
Gso3g1343 445 MobiDBLite consensus disorder prediction 125 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1343 Gso-Chr3 39326046 39331508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1343 19 364 C3H Transcription Factor Family AT2G30580 55.331 5.06e-119 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1343 K16277 - gmx:100815540 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1345 19 42153291 42159277 Gso3g1343 3 39326046 39331508 GST
Gso3g1343 3 39326046 39331508 Gso2g1171 2 14623345 14629194 PCT
Gso3g1343 3 39326046 39331508 Gso10g0277 10 2916537 2922450 PCT
Gso2g1171 2 14623345 14629194 Gso3g1343 3 39326046 39331508 PCT
Gso10g0277 10 2916537 2922450 Gso3g1343 3 39326046 39331508 PCT