Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1336 ATGGAGGTTGGCCTCAACAAGAAGGAGAACATGGGGTTTGAGGAAACTGAGCTAAGGCTTGGACTGCCTGGAAACGTAGGAGGCACTGGCACTGAAGAAGTGCTCATCAGGAAGAGAGGTTTCTCTGAGACTGAAACTGAAACTGAGGAGGATGAGTCTGCTACCACTGTGGATTTGATGCTTAATCTTTCTTCTAAGGAAGCTGCTGCTGCTGCAGATCCAACTGATAAGCACAAGACTTTGCCTAAGGAGAAGACTCTTCTGCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCACAGGTGGTAGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAACATGTTAGCTGTACAAAAGAGCGTCGGAGAAGAGAACGAGAAGAACAGCAGCAGCCCTAATGCAAGCTTTGTCAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCGAGAGCTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCATAGGCAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAGCTGAATGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAG 765 0.4784 MEVGLNKKENMGFEETELRLGLPGNVGGTGTEEVLIRKRGFSETETETEEDESATTVDLMLNLSSKEAAAAADPTDKHKTLPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEENEKNSSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKSKNRS* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1336 254 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 245 - -
Gso3g1336 254 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 245 IPR003311 GO:0005634|GO:0006355
Gso3g1336 254 MobiDBLite consensus disorder prediction 71 85 - -
Gso3g1336 254 MobiDBLite consensus disorder prediction 20 101 - -
Gso3g1336 254 Pfam AUX/IAA family 15 241 IPR033389 -
Gso3g1336 254 ProSiteProfiles PB1 domain profile. 134 234 IPR000270 GO:0005515
Gso3g1336 254 Gene3D - 128 245 - -
Gso3g1336 254 SUPERFAMILY CAD & PB1 domains 124 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1336 Gso-Chr3 39262603 39266124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1336 120 237 B3 DNA Binding Superfamily AT3G61830 33.051 4.58e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso3g1336 AUX_IAA 7e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1336 K14484 - gmx:100810013 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1339 19 42103077 42106974 Gso3g1336 3 39262603 39266124 GST