Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1335 ATGGGGAGCTTTGAAACTGAACTGATGAATCTTAAGGCCACAGAGTTGAGGTTGGGACTGCCCGGCTGTGATGAAACTAATGAGAAAAGTTCATCCAGTAGTGGATCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAACCCAGTGTGGAAGAGTCCAGGTGCAACTCTAATGGTTCTTCAGATTCTACCACCACAAGTGATCATGATCAAGACAGTGCCCAACCTGAAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTGCAACAACAGAAGAAGGTGGAGCAGCTGCAGGGTGATGGAGGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAATAGCTACCCAGAACTCCTCGCAGCCTTGCAAAGTTTGTTCACGTGCACATTTGGTGAATATTCAGAGAGGGAAGGTTACAATGGATCTGAATACGCTCCAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAAGATAATCAAAGGATCAGAAGCAAAGGGTTTGGGTTGTTTGTGA 621 0.4541 MGSFETELMNLKATELRLGLPGCDETNEKSSSSSGSVVRSNKRSSPEPSVEESRCNSNGSSDSTTTSDHDQDSAQPEKVQVVGWPPIRSFRKNSLQQQKKVEQLQGDGGGMYVKVSMAGAPYLRKIDLKVYNSYPELLAALQSLFTCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLKIIKGSEAKGLGCL* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1335 206 SUPERFAMILY CAD & PB1 domains 108 194 - -
Gso3g1335 206 MobiDBLite consensus disorder prediction 18 82 - -
Gso3g1335 206 MobiDBLite consensus disorder prediction 25 70 - -
Gso3g1335 206 Pfam AUX/IAA family 14 204 IPR033389 -
Gso3g1335 206 PANTHER AUXIN-INDUCED PROTEIN 9 204 - -
Gso3g1335 206 ProSiteProfiles PB1 domain profile. 110 202 IPR000270 GO:0005515
Gso3g1335 206 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 204 IPR003311 GO:0005634|GO:0006355
Gso3g1335 206 Gene3D - 104 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1335 Gso-Chr3 39247876 39249299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1335 102 203 B3 DNA Binding Superfamily AT2G46530 36.275 8.35e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso3g1335 AUX_IAA 6.3e-60 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1335 K14484 - gmx:100809479 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1338 19 42088395 42089735 Gso3g1335 3 39247876 39249299 GST
Gso3g1335 3 39247876 39249299 Gso2g1181 2 14725381 14726978 PCT
Gso3g1335 3 39247876 39249299 Gso10g0271 10 2860778 2862540 PCT
Gso2g1181 2 14725381 14726978 Gso3g1335 3 39247876 39249299 PCT
Gso10g0271 10 2860778 2862540 Gso3g1335 3 39247876 39249299 PCT