Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1334 ATGGCGAATAACCCTTCCGACGCTCCCGCCGACGACTTCCTCGAACAAATTCTCGGCCTCCCGACCTTCGCTTCCGCCGACTCCGGCCTCTCCGCCGCCGATGTCGGCCTCGCCGGTGCGGCCACTCAGTCTCCGATGATGCTGCAGCTCAGCTCCGCCGACGCCAACGCTCACCTCGCCGGCGCATCCTTCCACGCGCCGGTGTACCAGCTAGGGCTGAGCTTGGAGCAGGGCAAAGGAAGATTCATGAAGCCCGACGAAGCCTCCGCTAGCGGAAAGCGCTTTCGCGACGACGTCGTTGATAATAGAGCTAAGCATGTTTTTCATGGGCAACCCATGCCTACTACTATGCCTGCTGCTCCTCATCCTCCAGCAATACGTCCTAGGGTGCGGGCCAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAACGATTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAGACAGATAGAGCAGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGACTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTCGAGGAAGAAGGTGGTGAAGGTGCGCGAAACCGGCCAGCTTGGGACAAGTGGTCGAACGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAACGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCTCTCTGCATCATGCCCATCTCACTGGCATCGGCAATATACCAGTCACAACCACCGGACACTTCTAGCATAGTCAAGCATGAAACTAGTCCTCCTTCCTAA 879 0.5415 MANNPSDAPADDFLEQILGLPTFASADSGLSAADVGLAGAATQSPMMLQLSSADANAHLAGASFHAPVYQLGLSLEQGKGRFMKPDEASASGKRFRDDVVDNRAKHVFHGQPMPTTMPAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKHETSPPS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1334 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Gso3g1334 292 Gene3D - 131 193 IPR036638 GO:0046983
Gso3g1334 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 281 - -
Gso3g1334 292 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
Gso3g1334 292 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 281 - -
Gso3g1334 292 SMART finulus 142 191 IPR011598 GO:0046983
Gso3g1334 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1334 Gso-Chr3 39235218 39239122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1334 64 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 79.574 1.84e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g1334 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1334 - - gmx:100808932 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1337 19 42075506 42079720 Gso3g1334 3 39235218 39239122 GST