Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1332 ATGGATTTCCACGGCGGAGGACCACTCCGTTCCCGCAGTTCCCAGTCCCCTTCTCCCTCTCACTCCGCCTCCGCCTCCGCCACCTCCTCCATCCACAAGCGCAAGCTCGTGTCCGAGGACCACGCGCCTCCCTTCCCCCCCTCCTCCTTCTCCGCCGACACCCGCGACGGTGCCCTCACCTCCAACGACGACCTCGAGAGCATCTCCGCCCGCGGCGCCGACTCCGACTCCGACTCCGAATCCGAGGACGCCGTCGTCGACGACGACGAGGACGACTACGACAACGACAACGACAACGACTCCTCCATGCGCACCTTCACCGCCTCCAGGCTCAGCAACCCTCCCTCCGCTCCCCGCAACACCAAGCTCAAGACCGAAAACTCCACCGTCAAAATTGAGAATTCTGACGGCGCCAAAGACGCCGGAGCCGTCGGATCTGGCGCCGCCGCCGCCGCGGGACCGGTCCCCGGGATTGTGGTTAAGGAGGACCCGACTAAGATTTTTACTGATAATTTGCAAACCAGTGGGGCTTACACTGCCAGGGAGGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAAGCTCAAATTTGTATGCCTTTCAAACGATGGTGTTGATGAACATATGGTTTGGTTGATTGGATTGAAGAATATATTTGCTAGGCAACTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGCAATCACGTTGTTGGAGGCATTACATATCGCCCATATGCTAGCCAGAGGTTCGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCCGATTGATGAATCACTTAAAACAGTTTGCACGTGATATGGATGGGCTGACACATTTCCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTATATAAAGGATTACGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTACACTGATTTGTCAACTATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAAATCAGAGAGCTGTCAAACTGTCACATCGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAAAAAATTATTGATGACATCCCTGGTTTGAGAGAGGCTGGGTGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAACTTTAAATGTTTCTTCTGACAATGCTACTAATCAAAAACATTTGAATGGGTTTATGCGTTCACTTCTAAAGTCAATGTTCGATCACGCTGATGCTTGGCCATTCAAGGAACCAGTTGATGCACGGGATGTCCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGTCTAAGAGGGTGGATTCAGAGCAATATTATGTAACATTTGAGATGTTTGTTGCGGATGCCAGAAGAATGTTTGCGAATGCACGCACCTATAATTCTCCAGAAACCATTTATTACAAATGTTCTACAAGGTTAGAAGCCCACTTTCAAAGCAAAGTGCAAGCAGGCCTCCAGCCTGGTACCAAAATTCAGTAG 1632 0.4835 MDFHGGGPLRSRSSQSPSPSHSASASATSSIHKRKLVSEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDSESEDAVVDDDEDDYDNDNDNDSSMRTFTASRLSNPPSAPRNTKLKTENSTVKIENSDGAKDAGAVGSGAAAAAGPVPGIVVKEDPTKIFTDNLQTSGAYTAREESLKKEEEAGKLKFVCLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQRFGEIAFCAITADEQVKGYGTRLMNHLKQFARDMDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRTLNVSSDNATNQKHLNGFMRSLLKSMFDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVDSEQYYVTFEMFVADARRMFANARTYNSPETIYYKCSTRLEAHFQSKVQAGLQPGTKIQ* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1332 543 PRINTS Bromodomain signature 450 463 IPR001487 GO:0005515
Gso3g1332 543 PRINTS Bromodomain signature 464 480 IPR001487 GO:0005515
Gso3g1332 543 PRINTS Bromodomain signature 499 518 IPR001487 GO:0005515
Gso3g1332 543 MobiDBLite consensus disorder prediction 79 97 - -
Gso3g1332 543 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 194 348 IPR000182 GO:0016407
Gso3g1332 543 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 213 349 IPR016181 -
Gso3g1332 543 SMART bromo_6 428 537 IPR001487 GO:0005515
Gso3g1332 543 MobiDBLite consensus disorder prediction 53 68 - -
Gso3g1332 543 CDD Bromo_gcn5_like 435 534 - -
Gso3g1332 543 ProSiteProfiles Bromodomain profile. 447 518 IPR001487 GO:0005515
Gso3g1332 543 MobiDBLite consensus disorder prediction 1 151 - -
Gso3g1332 543 MobiDBLite consensus disorder prediction 100 134 - -
Gso3g1332 543 PANTHER GH11602P 10 543 IPR037800 GO:0004402
Gso3g1332 543 MobiDBLite consensus disorder prediction 9 32 - -
Gso3g1332 543 PANTHER BNAC04G26160D PROTEIN 10 543 - -
Gso3g1332 543 CDD NAT_SF 241 296 - -
Gso3g1332 543 Gene3D - 420 538 IPR036427 GO:0005515
Gso3g1332 543 SUPERFAMILY Bromodomain 419 533 IPR036427 GO:0005515
Gso3g1332 543 Gene3D - 190 354 - -
Gso3g1332 543 ProSitePatterns Bromodomain signature. 452 510 IPR018359 -
Gso3g1332 543 Pfam Bromodomain 440 522 IPR001487 GO:0005515
Gso3g1332 543 Pfam Acetyltransferase (GNAT) family 241 319 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1332 Gso-Chr3 39219253 39226334 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gso3g1332 Bromodomain 7.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1332 K06062 - gmx:100813942 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1335 19 42053690 42061025 Gso3g1332 3 39219253 39226334 GST