Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1328 ATGGGTCTGGAAAAGAATCCTCGTGTGTTTTTCGATGTCTCAATCGACGGAGACCCTGTGGAAAGAATTGTTATTCAGCTTTTTGCCAGTATAGTTCCTAGGACAGCGGAGAATTTTCGGGCACTTTGTACAGGTGAGAAGGGCATTGGAGAATCAACGGGGAAACCTTTGCATTATAAAGGGACAAGCCTTCATCGTATAATTAGAGGTTTTATGGCTCAAGGTGGTGATTTTTCAAGGGGTAATGGCACAGGTGGAGAAAGTATATATGGGGGGAAATTTGCAGATGAAAATTTCAAACTAACACATGATGGACCTGGCATTCTTTCTATGGCTAATAGTGGTCCTAACACAAATGGATCTCAGTTCTTTATTACATTCAAGCGCCAACCTCATCTTGACGGGAAACATGTTGTTTTTGGAAAAGTTGTCAACGGAATAGACATTTTGAAGAAAATTGAGCAGGTGGGAACATCTGATGGGAAACCTACCCAGCCAGTTAAAATTATTGATTGTGGTGAAGTCTCTGAAACAAAAATTCAGCATACTGCAGAGAAGGAGAAAGGAAAAAGGAGAAAATCTGGGAAGTCCTTATCTTCTGATGATGGTTCTGACAAAAAATCAAGGGGAAAAAGGAAAAAATCTTCCAAAGACACAAGGAAGAGAAGGAGGAGATACTCAACATCTGATAGTGATAGCTATTCCTCAGATTCTGAGTCAGATTCAGATTCTGAATCGGATTCATCAGTTTCTGATTCTAGTTCCTCTAGTGATGGGAAACACCAGAAGAGGAGGAGAAATAAGCACAAGCATGGGAAGAAGAGGAAAATTGGACGAAAGCAGCGGAAGAGAAGCCAGCACGGTAGAACTAAAAAATCAAGACACAAGTCTAGGCGGAGCTCTGAGGATTCAAGTGATACAAATAGTGATAGCGCTAGTGGCAGTAGTTCTAGCGATGAGAAAGCTGATCGTCATGCCTCAGGTCGTAAAGCACCTGCTGACAATAAAGCCCAAAGAAATCTAGACACAGGAAAGCAATTTTCCAACCCTTCTTGTCAAAGGCAAACTATTCCTGAACAAACAATGGATCCCAAGGTAAGAAGAATTGTGGACAAGCAATCACATGAAGAAGGTGAATTCTCTCCGGAGAATGGTGCATTTGTGAATAACAGGCATGATACTCAAGCTGAATTTAGTAAACCTGCTAAGCAACATGCTAATTCAGATGATTCAAATCACAATAGAGGTGCAAGTCCTGGAAGAAGTCCTACCAGGGATTCTGGGGAGCTAAACCAAGGACGTGCTTTGTTGTTGGCTAGTCCTGGCAAAAAAAGTCCTGGCCAAAAAGCATCTGAACCTCCTGCCCCCAAACATGGTCAGGGATTTTCAAAAAGCCCTTCACCAAATAGCATGCCTAAGCGTATTAAAAAAGGGCGTGGCTTTACTGAGCGTTATGCCTTTGCACGAAGATATCGCACTCCATCTCCAGAGCGGTCTCCTCCTCATTCATATCGTTATGGTGATAGAAATATAAGAAGGAACTTTGATAGAAACACAAGCTACAGAAGTTATTCTGGGCGCTCTCCACCACGACGTTTTCGAAGCCCGCCAGGGGGCAGGAATCGTCCAAGATACCAAAGCAGAAGAAGTAGGAGTAGGAGCATCTCTGGCAGTCCAGTGCGTGGGCGTTTTAGAGAGCGTGACCGCAGCAGGAGTCCAAGACGTAGTCCTAGTCCAGAAGACAGGCTGCCTCTGATAAGTGACAGATTAAAATCCAGACTTGGTCCAAGAAGTGACGAAGGACTGCGAGACAGGGGGAGGTCGAGGTCGAGGTCGAAATCTAGGAGCAAAGGCTCTTCTCACTCCAGATCCCCTGATGCCACACCACCAAAACGATATGATAAAAGGACTTCTGTACCTCGTAGCAGGTCTAGATCCAGCTCTGCATCCGGCCAAAAGGGTTTAGTTTCTTATGGAGATGCCAGTCCTGATTCTGGCTCAAGGTAG 2007 0.4434 MGLEKNPRVFFDVSIDGDPVERIVIQLFASIVPRTAENFRALCTGEKGIGESTGKPLHYKGTSLHRIIRGFMAQGGDFSRGNGTGGESIYGGKFADENFKLTHDGPGILSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVVNGIDILKKIEQVGTSDGKPTQPVKIIDCGEVSETKIQHTAEKEKGKRRKSGKSLSSDDGSDKKSRGKRKKSSKDTRKRRRRYSTSDSDSYSSDSESDSDSESDSSVSDSSSSSDGKHQKRRRNKHKHGKKRKIGRKQRKRSQHGRTKKSRHKSRRSSEDSSDTNSDSASGSSSSDEKADRHASGRKAPADNKAQRNLDTGKQFSNPSCQRQTIPEQTMDPKVRRIVDKQSHEEGEFSPENGAFVNNRHDTQAEFSKPAKQHANSDDSNHNRGASPGRSPTRDSGELNQGRALLLASPGKKSPGQKASEPPAPKHGQGFSKSPSPNSMPKRIKKGRGFTERYAFARRYRTPSPERSPPHSYRYGDRNIRRNFDRNTSYRSYSGRSPPRRFRSPPGGRNRPRYQSRRSRSRSISGSPVRGRFRERDRSRSPRRSPSPEDRLPLISDRLKSRLGPRSDEGLRDRGRSRSRSKSRSKGSSHSRSPDATPPKRYDKRTSVPRSRSRSSSASGQKGLVSYGDASPDSGSR* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1328 668 SUPERFAMILY Cyclophilin-like 5 175 IPR029000 -
Gso3g1328 668 MobiDBLite consensus disorder prediction 180 668 - -
Gso3g1328 668 MobiDBLite consensus disorder prediction 502 516 - -
Gso3g1328 668 CDD cyclophilin_ABH_like 7 173 - -
Gso3g1328 668 MobiDBLite consensus disorder prediction 180 209 - -
Gso3g1328 668 MobiDBLite consensus disorder prediction 364 379 - -
Gso3g1328 668 MobiDBLite consensus disorder prediction 261 296 - -
Gso3g1328 668 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Gso3g1328 668 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Gso3g1328 668 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Gso3g1328 668 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Gso3g1328 668 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Gso3g1328 668 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Gso3g1328 668 MobiDBLite consensus disorder prediction 411 429 - -
Gso3g1328 668 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 413 - -
Gso3g1328 668 MobiDBLite consensus disorder prediction 339 360 - -
Gso3g1328 668 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 4 413 - -
Gso3g1328 668 MobiDBLite consensus disorder prediction 560 607 - -
Gso3g1328 668 MobiDBLite consensus disorder prediction 317 336 - -
Gso3g1328 668 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 17 173 IPR002130 GO:0000413|GO:0003755
Gso3g1328 668 MobiDBLite consensus disorder prediction 396 410 - -
Gso3g1328 668 MobiDBLite consensus disorder prediction 627 641 - -
Gso3g1328 668 Gene3D - 2 182 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1328 Gso-Chr3 39192460 39198613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1328 3 171 U-box Gene Family AT5G67530 46.286 1.61e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1328 K09566 - gmx:100807327 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1330 19 42023073 42028878 Gso3g1328 3 39192460 39198613 GST