Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1325 ATGTTCCCCACTGCTATTTCCTATTCAACTTCTTTGTCTGAGGATGCCAGTGTTTCTTCTGGTACAAAAGTTCAGGACTTGGGAGGACTCAATCATGGGGTCTCAAGCATTTCTCCTCAGCAACAGCCTCAAAAGATCAAGAAAAAGAGGAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTATGGCCACAAACAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCCGAGAGATCAGAACCTGCAGCTACATAAGAGGGGCCACAACCTCCCTTGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTGAAAAAGAAAGCATACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCCCTGGGGGATCTTACAGGAATCAAGAAACACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATACGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACACTTTTTTCCAGGAAGGACAGTTTCATAACACATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAATTAGCCGCTGCAGCCGCCGCCACCGTCACCACCACAACAACAAACCCATTCCAATCTCTATATCTTTTCCAAACCCAACAACAGAACTTCCAAAACCACCAAATGACCAGTTTCAACCAATGGGACTCATCTCAAGAAAACCCTAACCCTAGCAACAACATTGCCACCACTTCCCTCCACATCAAGCCAGAGTCTCAAAGCTTCCACAACCCCACCCTCTCTTCATTTCTCCAACAGCAACAACAAGGGCAACAGCCCAACAACAACAACAGGGGCATGATAGCCTCACCATTTGGGAACCTCCACGTGGCAGCAGCAGCACCTGCCACGTCATCATACATGTCAGCCACTGCGCTGCTTCAGAAGGCTGCAACCGTTGGAGCCGCTGCCATAACAGGCCCAGTACCTGTTGGGCCACAACAGCGCGTGAGGGGTCACGTGGCTCACCACCTCGGCGCAGGCGAGTTCGGAATCGGTACAGTGAGTCAACTCGACCCGGTGGTGTTGGTGCCAGATAACAACAACTACACGAGAACAATGTTCAAGAGTAGTGACCGTCTCACAAGGGACTTTCTGGGTCTCACGGCAGATGCTAACGGCGGCGCGGTTGACGTTAGCACCAACGTCAAGGATATGCTAGCGTTCACTGGGGCCGTAGAGTACCACCAAGTCCAACCGCACCGTCAACATCATCACCACCACGCGCTTCTGAAGCCCCAACAAGGCTTTGGTTTCCTTGGGACAACCACTGCCCCCGAGACGTGGTGGAATTGTTAG 1419 0.5025 MFPTAISYSTSLSEDASVSSGTKVQDLGGLNHGVSSISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLMATNRFVCEICHKGFPRDQNLQLHKRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAAAAAATVTTTTTNPFQSLYLFQTQQQNFQNHQMTSFNQWDSSQENPNPSNNIATTSLHIKPESQSFHNPTLSSFLQQQQQGQQPNNNNRGMIASPFGNLHVAAAAPATSSYMSATALLQKAATVGAAAITGPVPVGPQQRVRGHVAHHLGAGEFGIGTVSQLDPVVLVPDNNNYTRTMFKSSDRLTRDFLGLTADANGGAVDVSTNVKDMLAFTGAVEYHQVQPHRQHHHHHALLKPQQGFGFLGTTTAPETWWNC* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1325 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Gso3g1325 472 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Gso3g1325 472 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Gso3g1325 472 Gene3D Classic Zinc Finger 110 200 - -
Gso3g1325 472 MobiDBLite consensus disorder prediction 279 305 - -
Gso3g1325 472 MobiDBLite consensus disorder prediction 17 48 - -
Gso3g1325 472 MobiDBLite consensus disorder prediction 17 59 - -
Gso3g1325 472 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 450 - -
Gso3g1325 472 SMART c2h2final6 76 98 IPR013087 -
Gso3g1325 472 SMART c2h2final6 152 172 IPR013087 -
Gso3g1325 472 SMART c2h2final6 117 147 IPR013087 -
Gso3g1325 472 Pfam Zinc finger, C2H2 type 76 98 IPR013087 -
Gso3g1325 472 Gene3D Classic Zinc Finger 72 99 - -
Gso3g1325 472 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1325 Gso-Chr3 39138617 39143265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1325 15 461 IDZ Gene Family AT4G02670 49.348 4.74e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1325 zf-C2H2 0.0028 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1325 K25870 - gmx:100812334 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1325 19 41960413 41964780 Gso3g1325 3 39138617 39143265 GST
Gso3g1325 3 39138617 39143265 Gso10g1396 10 40374577 40378704 PCT
Gso2g1194 2 14903903 14908172 Gso3g1325 3 39138617 39143265 PCT
Gso10g0258 10 2681722 2686333 Gso3g1325 3 39138617 39143265 PCT