LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1324	ATGAACTACTTGTATCCTGTGAAAGAAGAGTACTTGGAATGGCCACCACCGTCGTCGTCGCCGCCAACAACGGGAGGAGTTGATGAGTCAGCAATGGTTCCTCCTCCTCGGCCAATGGGGGGGCTTCACGAAATAGGGCCACCCCCATTTCTGACCAAGACTTACGATGCAGTGGAGGATCCCACCACTAGCCACATGGTTTCATGGAACAGAGGAGGTGCCAGCTTTGTTGTTTGGGATCCACACGCTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTTAGACAACTAAACACTTACGGTTTTAGAAAAATTGATCCAGATAGGTGGGAGTTTGCAAATGAAGGATTCCTTAGAGGGCACAGGCACCTGTTGGCAAACATAAGGAGAAGGAAACAACCTTCTTCTCAGCCTTCTTCTTCTTCTTCTTCATCCTCTTATTATTATTATTCTTCTTCTTCTCAACAAGCACAACAAGGTCACTGTGTTGAAGTTGGTCGCTTTGGACTTGATGAAGAGATTGATCGTTTGAGGCGTGACAAGCACGTGTTGATGATGGAGCTTGTGAAGCTGAGACAGCAGCAACAGAACACAAGGTCATACCTTCAAGCAATGGAGGAGAGGCTAAGAGGGACGGAAATTAAGCAGCAACAAATGATGGCTTTCTTGGCTAGAGCTTTGAAAAATCCAACCTTTATTCAGCAGCTACTTCAGCAGAAGGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCCAAGAAGAGGAGAAGGCCAATTGAGAGAGGGCCAAACCATGGGGTTGTTGGAGAAGAATCAAGCAGTGTTAAGGTTGAGTCTCTTGTGTTTGGTGATGAATATGGTTTTGGAGTGTCAGAGTTGGAAGTGTTAGCTATGGAGATGCAAGGTTATGGTAAGGGAAGGAGGGAACAAGAGGAGGAGCCTGATGAGGCACTAGATCAATCACAAGAGAGGCTGGAGAAAGAGCTTGATGAAGGGTTCTGGGAAGAACTTTTCAGTGAGGGTTTTGAGGGTGAATTGGATACTAATCCAACTAATTCCCAAGACCAAGATGAAGAAGAAGAAGATCATGTCAATGTGTTGGCCAATCGCTTTGGTTACTTGGGTTCAAGTCCTAAATGA	1161	0.4565	MNYLYPVKEEYLEWPPPSSSPPTTGGVDESAMVPPPRPMGGLHEIGPPPFLTKTYDAVEDPTTSHMVSWNRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLANIRRRKQPSSQPSSSSSSSSYYYYSSSSQQAQQGHCVEVGRFGLDEEIDRLRRDKHVLMMELVKLRQQQQNTRSYLQAMEERLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIERGPNHGVVGEESSSVKVESLVFGDEYGFGVSELEVLAMEMQGYGKGRREQEEEPDEALDQSQERLEKELDEGFWEELFSEGFEGELDTNPTNSQDQDEEEEDHVNVLANRFGYLGSSPK*	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1324	386	PRINTS	Heat shock factor (HSF) domain signature	50	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1324	386	PRINTS	Heat shock factor (HSF) domain signature	88	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1324	386	PRINTS	Heat shock factor (HSF) domain signature	101	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1324	386	MobiDBLite	consensus disorder prediction	258	277	-	-
	Gso3g1324	386	SUPERFAMILY	"Winged helix" DNA-binding domain	46	139	IPR036390	-
	Gso3g1324	386	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	30	369	IPR027725	-
	Gso3g1324	386	Gene3D	-	43	140	IPR036388	-
	Gso3g1324	386	MobiDBLite	consensus disorder prediction	14	34	-	-
	Gso3g1324	386	MobiDBLite	consensus disorder prediction	138	156	-	-
	Gso3g1324	386	Coils	Coil	244	264	-	-
	Gso3g1324	386	Coils	Coil	182	216	-	-
	Gso3g1324	386	MobiDBLite	consensus disorder prediction	311	369	-	-
	Gso3g1324	386	ProSitePatterns	HSF-type DNA-binding domain signature.	89	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1324	386	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-6B	30	369	-	-
	Gso3g1324	386	SMART	hsfneu3	46	139	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gso3g1324	386	MobiDBLite	consensus disorder prediction	311	341	-	-
	Gso3g1324	386	MobiDBLite	consensus disorder prediction	136	156	-	-
	Gso3g1324	386	Pfam	HSF-type DNA-binding	50	139	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1324	Gso-Chr3	39126975	39129716	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g1324	25	384	HSF	AT3G22830	51.804	2.70e-125	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gso3g1324		HSF_DNA-bind	5.5e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1324	K09419		-	gmx:100811798	696.812

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1324	19	41945445	41948350	Gso3g1324	3	39126975	39129716	GST
	Gso3g1324	3	39126975	39129716	Gso10g0257	10	2669927	2672600	PCT
	Gso10g0257	10	2669927	2672600	Gso3g1324	3	39126975	39129716	PCT