Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1321 ATGGAGCAGTATGAAATTCTAGAACAGATCGGCAAAGGTGCATTTGGTTCTGCCCTTCTTGTGAGGCACAAGCACGAAAAGAAAAAGTATGTTCTTAAAAAGATCCGCCTTGCTCGTCAAACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCCGAAGCTATAAAAAAGGCTAATGGTATTAACTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAATTGCTGATGGCACTTGATTATTTGCATGGAAATCATATTCTTCATCGTGATGTCAAGTGCTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGTCATCTGATGATCTTGCTTCCTCGGTTGTTGGCACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGTTGTATCTATGAAATGGCTGCTTACAAGCCAGCTTTTAAAGCTTTTGACATACAATCATTGCTTATAAAAATAAACAAGTGTATAGTATCTCCCATGCCAACTATGTATTCTGCTGCTTTTCGAGGGCTTGTCAAAAGTATGTTGCGGAAAAATCCTGAGTTGAGGCCAACTGCTGCAGAATTACTTAATCATCCACATCTTCAGCCTTACATTCATAAAATTCAACTAAAATTAAATAGCCCCAGAAGAAGTACTTTTCCATTCCAATGGCCCGAGTCAAATTACGTAAGGAGAACTCGGTTCGTAGATCCAGAGTCTGTTTACACTCTTTCTGACCTAGATAAATGTTTGTCATTTAGCAATGACATGGCCTTGAATCCTAGTGTTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAAAAGAGAAGATCTATGAACTATCTGTAGGTTGTGTCCGTGAAAAATACAAAACTGACAAATCAAAAGCCAGTAAGTTCTCAACTGTTGAGAGAACACCAAGATCAAGAGCAGTTACGGTTTCTGCCACTACCAAAAGGCATACAATAGCAACATCAAAGACAACCCATTCTGGTCCAAAACGTGATTCACTTCCAGCATCTCATGCACCATCTAGAAAATTTTCCACACCACCAAGAACCAGGGCAAGGGCAACACCAAACTTGTACACTAATGTTCTTGGAAGTCTAGACTCTCTTGATGTTTCCATTAATGCACCGCGAATTGACAAGATAGTTGAATTCCCAATGGCTTTCTGCGAGGATCCTTTTTCACCTATCCGTGGACCATCATCAACATCAGCGCGCTGCTCTTCTAGTTCAGCAGGGAGTACTGCTGATTGCTCCATCACAAAGGACAAGTGTACAATCCAAGAGGACAAAGTTACTCTCCCCACAAGTATCACTGATGCTTGCCCTGCTCCAAAGGAAACTAAATGCTCTTATGAGCATGTCAAAGATTGTGTTTCAAGTCATTCCTCTACTGACTTGGATCAACGCCGGTTTGACACATCATCGTACCAGCAACGTGCGGAGGCATTGGAGGGGTTGCTGGAGTTCAGTGCTAGGCTCCTACAACAACAGAGGTTTGATGAGCTTGGGGTGTTGCTAAAGCCATTCGGGCTTGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGACCAAGAGCTTTAAACAAACTGCAGTCTAA 1812 0.4145 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGINFPEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLSSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAYKPAFKAFDIQSLLIKINKCIVSPMPTMYSAAFRGLVKSMLRKNPELRPTAAELLNHPHLQPYIHKIQLKLNSPRRSTFPFQWPESNYVRRTRFVDPESVYTLSDLDKCLSFSNDMALNPSVSGTEQVSQCSTQRAHGLSTCSKEKIYELSVGCVREKYKTDKSKASKFSTVERTPRSRAVTVSATTKRHTIATSKTTHSGPKRDSLPASHAPSRKFSTPPRTRARATPNLYTNVLGSLDSLDVSINAPRIDKIVEFPMAFCEDPFSPIRGPSSTSARCSSSSAGSTADCSITKDKCTIQEDKVTLPTSITDACPAPKETKCSYEHVKDCVSSHSSTDLDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGLEKVSPRETAIWLTKSFKQTAV* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1321 603 MobiDBLite consensus disorder prediction 410 424 - -
Gso3g1321 603 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gso3g1321 603 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1321 603 CDD STKc_Nek 3 258 - -
Gso3g1321 603 PANTHER SERINE/THREONINE-KINASE NEK4 1 592 - -
Gso3g1321 603 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gso3g1321 603 MobiDBLite consensus disorder prediction 373 424 - -
Gso3g1321 603 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1321 603 MobiDBLite consensus disorder prediction 373 402 - -
Gso3g1321 603 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1321 603 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 592 - -
Gso3g1321 603 SUPERFAMILY Protein kinase-like (PK-like) 1 326 IPR011009 -
Gso3g1321 603 Gene3D Transferase(Phosphotransferase) domain 1 86 291 - -
Gso3g1321 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1321 Gso-Chr3 39076734 39084628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1321 10 259 MAP Kinase Kinase Kinase AT1G53570 30.980 3.08e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso3g1321 Pkinase 1.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1321 K08857 - gmx:100805201 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1320 19 41903666 41911408 Gso3g1321 3 39076734 39084628 GST
Gso3g1321 3 39076734 39084628 Gso2g1200 2 14957577 14963568 PCT
Gso3g1321 3 39076734 39084628 Gso10g0253 10 2616988 2624094 PCT
Gso2g1200 2 14957577 14963568 Gso3g1321 3 39076734 39084628 PCT
Gso10g0253 10 2616988 2624094 Gso3g1321 3 39076734 39084628 PCT