Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1309 ATGCCAAACACAAACACGCCGCCAACAAGAAAAAGAAACAACCTCAGCCGCTACAACCTGAAACTATGTTTCTCCAATCCCATGCAACCGTTCACACCCAAATCTCATCCGACAAACCCCACCGCCACTTCCTCACCCGTTCATCACAATCACAACCATCCATCACCACCCGCCACGTCATCAACCCTAATCAAGGACTTCAACCATGATCGCAGTACCGTGACCCCACAAAACCCATTTCCGAGCCTTGGACCCGAACCCAAACCTGCCGACTTGGTCACCGCTTTTGCCTCCCAACGATTCTTCTTCACCTCCCCCGGCCGCTCCAACTCCATCGTCGAATCCGCCAACACCACCGACACCGACTGCACCACATCCTCATCCATTGACGAAAGACAGGACCAATTCAAGAGTTTCATTCATGATTCTGACGAAAGGGAAGCAAAGGCGTTATTGGACAGCAGCATTGCAGTAACGAAGTACTCGCCGGACCCTTACGCGGACTTCCGGCAGTCGATGGAGGAGATGGTGGCGGCGCGTCCCGAGTTGATGGACGTGGCGTCCAAATGGCGCGAGCTGCACGAGCTTCTTCTTTGTTATCTTGCGCTCAACCCGAAAAGCACGCACAAGTTCATTCTCCGTGCTTTTTCTGATTTTCTCCTCAGCCTCATATCGCGTTCTTATTTTCCGCCGCAGGATCCCGGTTCCGATGACGATGACGTTGCCGGCGACGGCGGTGGATGTTCGAGTTAG 753 0.5352 MPNTNTPPTRKRNNLSRYNLKLCFSNPMQPFTPKSHPTNPTATSSPVHHNHNHPSPPATSSTLIKDFNHDRSTVTPQNPFPSLGPEPKPADLVTAFASQRFFFTSPGRSNSIVESANTTDTDCTTSSSIDERQDQFKSFIHDSDEREAKALLDSSIAVTKYSPDPYADFRQSMEEMVAARPELMDVASKWRELHELLLCYLALNPKSTHKFILRAFSDFLLSLISRSYFPPQDPGSDDDDVAGDGGGCSS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1309 250 PANTHER TRANSCRIPTION REPRESSOR OFP12 18 228 - -
Gso3g1309 250 MobiDBLite consensus disorder prediction 1 79 - -
Gso3g1309 250 MobiDBLite consensus disorder prediction 1 90 - -
Gso3g1309 250 Pfam Transcriptional repressor, ovate 162 223 IPR006458 -
Gso3g1309 250 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 156 224 IPR006458 -
Gso3g1309 250 ProSiteProfiles OVATE domain profile. 158 222 IPR006458 -
Gso3g1309 250 MobiDBLite consensus disorder prediction 231 250 - -
Gso3g1309 250 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 18 228 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1309 Gso-Chr3 38937099 38938544 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso3g1309 Ovate 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1309 - - gmx:102659610 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1308 19 41760641 41761832 Gso3g1309 3 38937099 38938544 GST
Gso3g1309 3 38937099 38938544 Gso2g1212 2 15123192 15124018 PCT
Gso3g1309 3 38937099 38938544 Gso10g0239 10 2481152 2482202 PCT
Gso2g1212 2 15123192 15124018 Gso3g1309 3 38937099 38938544 PCT
Gso10g0239 10 2481152 2482202 Gso3g1309 3 38937099 38938544 PCT