Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1308 ATGGGTGAGAATTCGCAGTCTCAGACAACGCTCGAGAAACATGACGATGGTGATGAAAGAGGGGTTAAGGAGAGTGGGAACGGAGAATGCTCAAGGAGTCTTGAGGTGTATTTTGGCGATTACGCAATGATAAACATGGGAGAATTTTCAGGGTTTCCTCTGTCATTTGATGTTGGAAATTCAAACCCTCCTAATGATGGCGACAAAGACAAGATTCTGGGGCAGGAAGTTATTACAAGACTTCAAAATAATGGTCACAAAGATAAGACATTTCTAAGGTTGGAACTTATTGAAAGACTTCAGCACCGCACCAGAGGTTTAAGACGTTTAACTAGGATACATGGTGTGGACTTGACGAACGAAACTGAGGATACATGCCCCAGGAGATCCATAAAGAAAGAAATATTAGAAGAGGTGCTGGGAATTTCTCATCCCATGGTGAGTCAATCTGAGAAGGTTGTGGCACATGATGAGGAAAATGATGTAAATGTGCTTGAAAAAGAGCCACGTTCTGGTGCAAGAAAGACTAGGTCTGCTAGTAGGAAGCTGAACACAGGAAAAAAAACTGTGCTTTCATGGATGATTGAAACTGGAACAATACGGCAACGTGAGAAGGTTCATTATATGGATCACAAAAATGAACGTGCACTACTGAGTGGTGAAATCTTTGGAGACGGAATTCTGTGTGATTGTTGTTTTCAAGTTGTGTCCATTTCACAGTTTGAAGCCCATTCAAGGAGGCAAATAATCTCTGATGATACAGTACTGGAGAATATGTCTGAGGAATCTGATCCACTGAAGAATATGTTCGAAGAGAGGAGAGGACGTTCTCTCTTGCAATGCATGGAAGAAGCATGGAATAGACAAGATAAATCTTCTGTTGGTAAATTCTATAACGAAGTTCGTGTTAGGGGGAGTGACTATAACGATGTTACTTGTAGTCTCTGTGGGAAACGTGGAGACCTTATTTGTTGCGACACTTGCCCATCAACTTTCCATCAAAGCTGCTTGGATATACAAACACTTCCATCAGGTGACTGGAACTGTATCTATTGCTGTTGCAAATTTTGTGGGTTGTATAAGCAAATGGACAGCTTTCAGTTATCCTCATGCCGTCTATGCGAGCAAAGATATCACCAATCCTGTCTTGAGGCCACTGGAGCCAATACTTCTCATTCTAAACACTCATCCTTATGTGGAAACGGGTGTAAAGAGTTATATGAGAGACTTGAAAAGCTTCTTCGGGTTAAACATAATATAGAAGATGGATTTTCTTGGTCTTTTATTTGCCGGTCAGATGTTGATTCTAACGCCACGCAGATAGAACCCCGTGTGGTTGAATGTAATGCCAAAATCGCTGTTGCGTTATCTGTAATGTATGAGGGCTTCAGGCCATGCATTGATGATGGAAGTGAGATTAATCTGATCCACAGTGTTATGTATAATTGTGGGTAA 1455 0.4137 MGENSQSQTTLEKHDDGDERGVKESGNGECSRSLEVYFGDYAMINMGEFSGFPLSFDVGNSNPPNDGDKDKILGQEVITRLQNNGHKDKTFLRLELIERLQHRTRGLRRLTRIHGVDLTNETEDTCPRRSIKKEILEEVLGISHPMVSQSEKVVAHDEENDVNVLEKEPRSGARKTRSASRKLNTGKKTVLSWMIETGTIRQREKVHYMDHKNERALLSGEIFGDGILCDCCFQVVSISQFEAHSRRQIISDDTVLENMSEESDPLKNMFEERRGRSLLQCMEEAWNRQDKSSVGKFYNEVRVRGSDYNDVTCSLCGKRGDLICCDTCPSTFHQSCLDIQTLPSGDWNCIYCCCKFCGLYKQMDSFQLSSCRLCEQRYHQSCLEATGANTSHSKHSSLCGNGCKELYERLEKLLRVKHNIEDGFSWSFICRSDVDSNATQIEPRVVECNAKIAVALSVMYEGFRPCIDDGSEINLIHSVMYNCG* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1308 484 SMART PHD_3 356 404 IPR001965 -
Gso3g1308 484 SMART PHD_3 312 353 IPR001965 -
Gso3g1308 484 PANTHER PHD FINGER PROTEIN 12 185 484 IPR042163 GO:0003714|GO:0045892
Gso3g1308 484 PANTHER PHD FINGER PROTEIN 12 9 184 IPR042163 GO:0003714|GO:0045892
Gso3g1308 484 MobiDBLite consensus disorder prediction 157 175 - -
Gso3g1308 484 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 185 484 - -
Gso3g1308 484 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 9 184 - -
Gso3g1308 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 403 IPR013083 -
Gso3g1308 484 ProSiteProfiles Zinc finger PHD-type profile. 310 355 IPR019787 -
Gso3g1308 484 ProSitePatterns Zinc finger PHD-type signature. 313 352 IPR019786 -
Gso3g1308 484 MobiDBLite consensus disorder prediction 1 28 - -
Gso3g1308 484 MobiDBLite consensus disorder prediction 9 26 - -
Gso3g1308 484 SUPERFAMILY FYVE/PHD zinc finger 286 353 IPR011011 -
Gso3g1308 484 MobiDBLite consensus disorder prediction 157 183 - -
Gso3g1308 484 Pfam Tify domain binding domain 220 285 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1308 Gso-Chr3 38928445 38931440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1308 185 484 PHD Transcription Factor Family AT1G05380 43.974 1.51e-74 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1308 - - gsj:114405256 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1308 3 38928445 38931440 Gso2g1213 2 15126239 15134564 PCT
Gso2g1213 2 15126239 15134564 Gso3g1308 3 38928445 38931440 PCT