Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1298 ATGGAAAAGCGTTACCCTGTTGCTAGAAGAAGCTCGAAGCGGAAGCTCGAAGCAGATCTAACCGAAGACCAGACACATACCAAGGCGTCAAAGATCTCTGCAAAGATTCTCAAACAGGTTTCTCTCCTCAACTCCGCTGCTATTCCGTTCACTGCGTTGGATTGTGCTACCGTTAAGAGCGCTGTCCACTCCCTCTCTGTACTCGCCGCAAATGAGGATCTTGTGGATACTATACTGAATTGCGGTGTCGTCCCTGCTCTGGTGAGGCATCTTCGGTTGACAGACAACATGCGGAAATATGACGGTCATGAGGCAGAAACTGTGAAAGATTACAGCGATGGTGTTACGGAACATGATCAGTTTGATGTCGTCAAAAGATGTGCGGTCATCCTTGAGCTTCTTGCCATTGAACAAGAGTATCAGCAGCTCATTGTAGATGCTGGAGCCTTACCCTGTCTTGTTGATTGGTTAAGGATGCAAAAGATCAGTACTACTTCTCAACCACTTATTGACCTTCTAAAGAGAGTAGCTGATGCAATAACCAGCCTAATCCATGAAAATAATGGCATTAAAACCCTATTCAGGATGGAAGGCGGTATAGCTCCTCTTGTTGAATTGCTTGAATTCAATGACATAAAGGTACAGCGAGCAGCTGCACGGGCCTTGCGAACTCTTGCATTTAAAAACGATGGCAATAAAAATCAGATTGTTGAAAGCAATGCATTACCCACTCTTGTACTAATGCTTCAATCAGAGGATCCTAAAACACATTATGAGGCGGTTGGTGTGATTGGAAATCTGGTCCACTCTTCTCCAGATATTAAGAAAGAAGTTCTTCTAGCAGGTGCTTTACAACCTGTCATTTCTTTACTTAGTTCTTGCTGTTCGGAGAGCCAAAGAGAAGCAGCCCTTTTAATTGGTCAGTTTGCCACAACAGATTCAGATTGCAAGGTTCATATTTGCCAAAGAGGGGCTATTCCACCATTAGTTGACATGCTTAGGTCTCCAGATGCTGAGCTTCAGGAAATGTCAGCTTTTGCACTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGGTCAATGTGGAGGTATAGAGCCTCTGCTCAAACTTCTTGACTCAAAGAAGGTGCCAGTCCAACAAAATGCTATTTTTGCTCTCTATAGTCTCGCTGATAATGAGGACAATGTTGCTGCCATTATTAAGGCTGATGGTTTTCGAAAACTGAAGGCTGGAAATTTCAGAAATCAACAAACTGTAGAATGTGTAGCAAAGACCTTAAAAAAATTAGAGGAAAAGACTCAAGGGCGAGTGTTGAAACACCTAATACATCTTATGCGCTTTGCGGAAGCTGTTCAAAGACGTGTAGCTATTGCTCTTGCTTATTTATGTTCTCCTCATGATCGTAAAACTATATTCATTAACAATAATGGATTAAAATTGCTGCTGGATACTCTTAAATCTTCAAACTTAAAGCAGAAAAGTGATGCTTCAGCGGCGCTTCATAAATTGGCTATCAAAGCCAGTTCTTCTTTCTCTCTTTTTGACATTGCTTCTCCATCACCAACTCTCCAGATGTACTTTGGCGATGAATATGTAAACAATCCTAAACTTTCTGACGTCACATTTCTGGTTGAAGGAAGAAGTTTTTATGCTCATAGAGATTGTTTACTTTCTTCAGATATATTTCGCGCAATGTTTGATGGCAGTTATAGGGAGAGGGAAGCCAAAAGTATAGTGATTCCAAATATTAAATGGGATGTCTTTGAATTGATGATGAGATATATATACACTGGAACAGTAGATGTCAATTTGGATATTGCTCAGGACCTGCTCAGAGCAGCAGATCAGTATCTTCTGGATGGCCTTAAGCGTATCTGTGAATATACTATTTCTCAGGAAATTTCTGAGGAAAATGTTTCACTACTGTACAAGATGTCAGAGGATTTCAATGCTACTTCATTAAAACATTCATGTATACTGTTTATGCTGGAGAAATTTGATAAACTGAGATGTGAACCATGGTATTGTCCTCTGGTTCGTCACATTTTACCAGACATATGCATGTTCTTCTCAACTTTACTTGTCAAATCTCATCCAACTGATTCGTGA 2118 0.4089 MEKRYPVARRSSKRKLEADLTEDQTHTKASKISAKILKQVSLLNSAAIPFTALDCATVKSAVHSLSVLAANEDLVDTILNCGVVPALVRHLRLTDNMRKYDGHEAETVKDYSDGVTEHDQFDVVKRCAVILELLAIEQEYQQLIVDAGALPCLVDWLRMQKISTTSQPLIDLLKRVADAITSLIHENNGIKTLFRMEGGIAPLVELLEFNDIKVQRAAARALRTLAFKNDGNKNQIVESNALPTLVLMLQSEDPKTHYEAVGVIGNLVHSSPDIKKEVLLAGALQPVISLLSSCCSESQREAALLIGQFATTDSDCKVHICQRGAIPPLVDMLRSPDAELQEMSAFALGRLAQDSHNQAGIGQCGGIEPLLKLLDSKKVPVQQNAIFALYSLADNEDNVAAIIKADGFRKLKAGNFRNQQTVECVAKTLKKLEEKTQGRVLKHLIHLMRFAEAVQRRVAIALAYLCSPHDRKTIFINNNGLKLLLDTLKSSNLKQKSDASAALHKLAIKASSSFSLFDIASPSPTLQMYFGDEYVNNPKLSDVTFLVEGRSFYAHRDCLLSSDIFRAMFDGSYREREAKSIVIPNIKWDVFELMMRYIYTGTVDVNLDIAQDLLRAADQYLLDGLKRICEYTISQEISEENVSLLYKMSEDFNATSLKHSCILFMLEKFDKLRCEPWYCPLVRHILPDICMFFSTLLVKSHPTDS* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1298 705 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 1 705 - -
Gso3g1298 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 282 IPR000225 GO:0005515
Gso3g1298 705 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Gso3g1298 705 ProSiteProfiles BTB domain profile. 541 607 IPR000210 GO:0005515
Gso3g1298 705 SUPERFAMILY ARM repeat 57 158 IPR016024 -
Gso3g1298 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 366 IPR000225 GO:0005515
Gso3g1298 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
Gso3g1298 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 233 IPR000225 GO:0005515
Gso3g1298 705 SMART arm_5 271 311 IPR000225 GO:0005515
Gso3g1298 705 SMART arm_5 427 467 IPR000225 GO:0005515
Gso3g1298 705 SMART arm_5 137 185 IPR000225 GO:0005515
Gso3g1298 705 SMART arm_5 468 508 IPR000225 GO:0005515
Gso3g1298 705 SMART arm_5 229 269 IPR000225 GO:0005515
Gso3g1298 705 SMART arm_5 354 394 IPR000225 GO:0005515
Gso3g1298 705 SMART arm_5 313 353 IPR000225 GO:0005515
Gso3g1298 705 SMART arm_5 187 227 IPR000225 GO:0005515
Gso3g1298 705 SMART arm_5 71 136 IPR000225 GO:0005515
Gso3g1298 705 MobiDBLite consensus disorder prediction 1 24 - -
Gso3g1298 705 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 705 IPR044282 -
Gso3g1298 705 Gene3D Potassium Channel Kv1.1; Chain A 511 666 IPR011333 -
Gso3g1298 705 Gene3D - 38 165 IPR011989 -
Gso3g1298 705 SUPERFAMILY POZ domain 532 634 IPR011333 -
Gso3g1298 705 SUPERFAMILY ARM repeat 172 516 IPR016024 -
Gso3g1298 705 Gene3D - 166 295 IPR011989 -
Gso3g1298 705 Pfam Armadillo/beta-catenin-like repeat 229 268 IPR000225 GO:0005515
Gso3g1298 705 Pfam Armadillo/beta-catenin-like repeat 361 393 IPR000225 GO:0005515
Gso3g1298 705 Pfam Armadillo/beta-catenin-like repeat 313 352 IPR000225 GO:0005515
Gso3g1298 705 Pfam Armadillo/beta-catenin-like repeat 196 226 IPR000225 GO:0005515
Gso3g1298 705 Gene3D - 296 510 IPR011989 -
Gso3g1298 705 SMART BTB_4 541 637 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1298 Gso-Chr3 38756712 38763969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1298 127 465 U-box Gene Family AT1G23030 26.796 1.87e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso3g1298 BTB 2.4e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1298 - - gmx:100806452 1373.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1301 19 41617469 41623398 Gso3g1298 3 38756712 38763969 GST