LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso3g1296	ATGGCGGCAATTGTTGTTGGTGCAACAGAAACATCAATTAGCACATCTAGACAGCTAGGAATCCCCCATCAATGTGCCAGCATCATTTGGATCTGCGGCCCAGTCCTCGACCTCTTCATGCAGCCCCTTATCGGCCACATTAATGACCGTTGCACTAGCCGCTTCGACCGTCGTAGGCCCTTCATCCTCATCGATGTCGTCATCATCTTTGTCGTTGTCCTTATCATTGCTTACACCGCCAACATCAGTTGGCTCCTCAGTGACACCACGGACTACCACCCTGTTACCATCACTATCTTCATTATCGACTTTTAG	315	0.4952	MAAIVVGATETSISTSRQLGIPHQCASIIWICGPVLDLFMQPLIGHINDRCTSRFDRRRPFILIDVVIIFVVVLIIAYTANISWLLSDTTDYHPVTITIFIIDF*	105

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso3g1296	104	Coils	Coil	102	104	-	-
	Gso3g1296	104	PANTHER	SUGAR TRANSPORTER	1	104	-	-
	Gso3g1296	104	Gene3D	MFS general substrate transporter like domains	2	100	IPR036259	-
	Gso3g1296	104	SUPERFAMILY	MFS general substrate transporter	18	85	IPR036259	-
	Gso3g1296	104	PANTHER	SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED	1	104	-	-
	Gso3g1296	104	Pfam	MFS/sugar transport protein	18	82	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso3g1296	Gso-Chr3	38743446	38744437	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso3g1296	17	104	Sucrose Transporter Gene Family	AT1G09960	47.191	1.34e-26	100

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso3g1296	K15378		-	gmx:113001245	202.986

Showing 1 to 1 of 1 entries