Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1290 ATGGCTACACCACCGCCAAATAACAGCCTTCAGACCATGTTGCGGGCTGCAGTGCAATCTGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGTCCTCATAAAGGGATTCTAACATGGGGTGATGGATACTACAATGGAGCAATTAAGACACGAAAGACAGTTCAAGCAATGGAAGTTAGCACCGAAGAAGCGTCTCTGCAAAGAAGCGAGCAACTTAGGGAGTTATATGAATCGTTGTCTGGTGGGGAGACAAACGCAAAAACACGAAGACCATGTGCTTCTTTGTCGCCGGAGGATCTAACGGAAACCGAATGGTTCTATTTGTTGTGTGTCTCTTTCTCCTTTCATCCTGGTCTCGGGTTGCCCGGAACAGCATATGCTAGAAGGCAGCATTTATGGCTCAGTGGAGCGAACGAAGTAGACAGCAAAACATTTTCAAGAGCTATTCTTGCCAAGAGTGCTCATATACAGACAGTGGTGTGCATTCCAGTGTTGGAGGGCGTCGTTGAGTTGGGCACAACCGATAAGATGGAGGAAGACCTAAATTTCATCCAACACATAAAGAGCTTCTTCATAGATCAGCAGCATCCTGCTCTCACGGCAAAGCCTGCACTATCAGAACAGTACTCCACTTCCAAGCCCACTTCTTCTTCTTCTTCATACCCTCTTGTCACTGCCAATAATACTATTCCAATCCAAAACATTGTTGATAGAGGAGAAGCTATAATATTGAATAATAATACCAAAGAAGCAGAATTAGCAGTCCCTAACAGTAGTTTCATACCGAGCGAGCTAATGGAACTGGATGCCACCTTGGAGGAATTCAGGGTTGGATCATCTGGAGATGGCTCCAACCACTTGGATTCATTCCCCACTGAGAAATCTATGGCACTGTGTTCAGCAGGGTTGGAGCTCCTTCAACTTCAACTTCCACCAGCTCCAGCACATCCTCCCACAGAAAACCTAGCACAAGGCGGCACAGACACACACTACTCTCAAACAGTGTCCAGCATCCTTCAAAAGAACTCCAGGAGGTGGCCGGAATCACCCTCTCTCAACCTCCTCACTGACTCCTTCCAATCAGCTTTCAACAAATGGAACTCCGGCGCTGACGACTACCAGCACCATTTCCACGTGTCGGTGGCCAGCGTCACCTCCCAGTGGCTCCTCAAGTACATTTTGTTCAGCGTCCCTTACTTGCACACCAACTGGCTCAAGGGCAAGGGCACTTCACCATACGAGACCAGTCACGTGATGGCGGAGCGTCACCGAAGGGAGAAGTTGAATGAGAGGTTTCTCATTCTGCGTTCGATGGTGCCTTCCGTGACAAGAATGGACAAGGCGTCTATCCTGGGAGACACCATCGAATACATCAAACAGTTGAGAGATAAGATTGAGAGCCTTGAGGCGCGTAAGCGCCTCACGGGAAAGAGAAGGATGAGGCAGGTGGAGGTTTCAATCATAGAGAGCGAGGCGCTGTTGGAGGTGGAGTGCGTGCATAGGGAAGGGTTGTTGTTGGATCTGATGACAAAGTTGAGGGAGTTAGGGGTGGAAGTGATGATGGTGCAGTCTTGGGTTAAGGATGATGGAGTGTTTGTGGCGGAGATGAGAGCCATGGTGAGGGAAAATGGTAACGGGATAAAGGCTAGTGTTATTGAAGTGAAAAATGCCCTTAATCAGATCATACCCCGTCATGAACCATACACACTTGCTTCCAGTGATCATTTTTAG 1734 0.4821 MATPPPNNSLQTMLRAAVQSVQWTYSLFWQLCPHKGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSGGETNAKTRRPCASLSPEDLTETEWFYLLCVSFSFHPGLGLPGTAYARRQHLWLSGANEVDSKTFSRAILAKSAHIQTVVCIPVLEGVVELGTTDKMEEDLNFIQHIKSFFIDQQHPALTAKPALSEQYSTSKPTSSSSSYPLVTANNTIPIQNIVDRGEAIILNNNTKEAELAVPNSSFIPSELMELDATLEEFRVGSSGDGSNHLDSFPTEKSMALCSAGLELLQLQLPPAPAHPPTENLAQGGTDTHYSQTVSSILQKNSRRWPESPSLNLLTDSFQSAFNKWNSGADDYQHHFHVSVASVTSQWLLKYILFSVPYLHTNWLKGKGTSPYETSHVMAERHRREKLNERFLILRSMVPSVTRMDKASILGDTIEYIKQLRDKIESLEARKRLTGKRRMRQVEVSIIESEALLEVECVHREGLLLDLMTKLRELGVEVMMVQSWVKDDGVFVAEMRAMVRENGNGIKASVIEVKNALNQIIPRHEPYTLASSDHF* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1290 577 Coils Coil 452 479 - -
Gso3g1290 577 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 413 462 IPR011598 GO:0046983
Gso3g1290 577 PANTHER TRANSCRIPTION FACTOR TT8 9 564 - -
Gso3g1290 577 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 415 477 IPR036638 GO:0046983
Gso3g1290 577 SMART finulus 419 468 IPR011598 GO:0046983
Gso3g1290 577 Pfam Helix-loop-helix DNA-binding domain 416 463 IPR011598 GO:0046983
Gso3g1290 577 Gene3D - 411 478 IPR036638 GO:0046983
Gso3g1290 577 PANTHER TRANSCRIPTION FACTOR TT8 9 564 - -
Gso3g1290 577 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 192 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1290 Gso-Chr3 38643700 38651715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1290 317 563 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 44.444 1.18e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g1290 bHLH-MYC_N 8.6e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1290 - - gmx:100802733 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1291 19 41480380 41488788 Gso3g1290 3 38643700 38651715 GST
Gso3g1290 3 38643700 38651715 Gso10g0225 10 2340333 2350162 PCT
Gso10g0225 10 2340333 2350162 Gso3g1290 3 38643700 38651715 PCT