Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1283 ATGAGCTATCACATGCATAATAATGAAGATACACACAGAGGTTTGAAAAGAAAGCCCCCACATATGGATCGAGGGCAAGAACGGAGGCCATACAATACGAATTCTAGACCTTATGATCGGAACACGGTTCCTGATGGTTGGTTAGACTGCCCACCACATGGGCAAGAAATAGGATGTATAATCCCTTCGAAGGTTCCACTTGGTGATTCCTTCAATGATTACATTCCAAGTCAAAAATATGCTCCCAAGCAAGCAATTCATCAACAAAGAGTCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGCTACTATCCTGTATCAGATTGGACAAAAGAAGGGATTGGTCATGTCAAGATAAGATGCACAGGAAGAGATGCTGTACCTGATGATGAATCCGTAAAATTCTTTTGTGATAAGGTTCTGGATTTTTGCTCCCAAAGAACAAACACAAAGAAATATATACTTGTACATTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCACTTTCTTGTGCGCACGGAATCTCTTTCTGTTACTGAGGCGATAAATAAATTTGCTTGTGCACGTCACCCAGGAATTTACAAGCAGGACTACATTGATGCCCTTTACATGTTTTATAATGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGAATTTCTGATCCTGATTTTCATGGCACAGCTGTTCCAGCTGTGGACAATAGTGCACACATTCCTGAACAGGAGAGAATTGTGAGGAATGAGGTATTAACAAGTGATGATGCTTTGGGAGATCCAATTCCTCCAAACCAGCTGCGTCCAATGCAAGAACTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGACGCTCGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGACAATCTGCAACTCTTAAGACAAAGATATTACTATGCCACGTGGAAAGCTGATGGGACACGATATATGATGCTGATTACTTGCGATGGTACACCCGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACAGATCCGCATACACATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATGGCTATCAATCAAGTTTCTTTGACAGAGCTGCCCTTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGCGAGGGCCTCTCAAAGAGTATAAATCCTTATTATAGATATGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTGCTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTATCACATTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTGTGAGGTGGGAGCTGGAGATCGTCCCTTGCTTTTTCTATTTGAACGTGGAAGGAAGAAGTTAATGGAGGAGAATGTTATTTTTAAAGATGCATCGGACATTTCTTCCTATTCAGGGAAGATCATTGAATGCTACTGGGATTCCGCGGAGCATCATTGGGTTTGTATGCGGATCAGAATAGACAAAGCCGCTCCAAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGAGGTCTTATTGAATGAGATCAATCAGATCATTCGCCTACCCTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGCATATGATCTCTTCGCGGCGCAAGTGA 1827 0.4165 MSYHMHNNEDTHRGLKRKPPHMDRGQERRPYNTNSRPYDRNTVPDGWLDCPPHGQEIGCIIPSKVPLGDSFNDYIPSQKYAPKQAIHQQRVLGRELGLVIDLTNTTRYYPVSDWTKEGIGHVKIRCTGRDAVPDDESVKFFCDKVLDFCSQRTNTKKYILVHCTHGHNRTGYMIVHFLVRTESLSVTEAINKFACARHPGIYKQDYIDALYMFYNEKKPEDLVCPQTPEWKRISDPDFHGTAVPAVDNSAHIPEQERIVRNEVLTSDDALGDPIPPNQLRPMQELCYQLLKLGTGGRGRSFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLMAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAGDRPLLFLFERGRKKLMEENVIFKDASDISSYSGKIIECYWDSAEHHWVCMRIRIDKAAPNDINTYRKVMRSIKDNITEEVLLNEINQIIRLPLYADRIQRDIKAHQHMISSRRK* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1283 608 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 139 208 IPR000387 GO:0016311|GO:0016791
Gso3g1283 608 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 231 IPR029021 -
Gso3g1283 608 Pfam mRNA capping enzyme, C-terminal domain 514 576 IPR013846 -
Gso3g1283 608 MobiDBLite consensus disorder prediction 1 46 - -
Gso3g1283 608 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 290 479 - -
Gso3g1283 608 SMART dsp_5 46 216 IPR020422 GO:0006470|GO:0008138
Gso3g1283 608 PIRSF mRNA_capping_HCE 30 343 IPR017074 GO:0004484|GO:0006370|GO:0140818
Gso3g1283 608 PIRSF mRNA_capping_HCE 340 608 IPR017074 GO:0004484|GO:0006370|GO:0140818
Gso3g1283 608 Pfam Dual specificity phosphatase, catalytic domain 94 215 IPR000340 GO:0008138|GO:0016311
Gso3g1283 608 Gene3D Protein tyrosine phosphatase superfamily 18 237 IPR029021 -
Gso3g1283 608 Gene3D - 510 585 IPR012340 -
Gso3g1283 608 SUPERFAMILY Nucleic acid-binding proteins 481 593 IPR012340 -
Gso3g1283 608 PANTHER MRNA-CAPPING ENZYME-LIKE 340 608 - -
Gso3g1283 608 PANTHER MRNA-CAPPING ENZYME-LIKE 6 341 - -
Gso3g1283 608 Pfam mRNA capping enzyme, catalytic domain 344 478 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gso3g1283 608 Pfam mRNA capping enzyme, catalytic domain 305 339 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gso3g1283 608 PANTHER MRNA-CAPPING ENZYME 340 608 - -
Gso3g1283 608 PANTHER MRNA-CAPPING ENZYME 6 341 - -
Gso3g1283 608 Gene3D DNA ligase/mRNA capping enzyme 342 478 - -
Gso3g1283 608 Gene3D DNA ligase/mRNA capping enzyme 265 341 - -
Gso3g1283 608 ProSitePatterns Tyrosine specific protein phosphatases active site. 161 171 IPR016130 GO:0016311|GO:0016791
Gso3g1283 608 CDD Adenylation_mRNA_capping 277 479 IPR001339 GO:0004484|GO:0005524|GO:0006370
Gso3g1283 608 CDD RNA_5'-triphosphatase 46 212 - -
Gso3g1283 608 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1283 Gso-Chr3 38568771 38577560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1283 18 598 Protein tyrosine phosphatase (PTP) family AT3G09100 60.194 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1283 K13917 - gmx:100793183 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1283 19 41399859 41414957 Gso3g1283 3 38568771 38577560 GST