Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1281 ATGACTATGACCATGTCAAGAGTGATGTGTAGGCCAACACAACCACTGAAAAACGTTCCTTCTAATTCTTCCATTAGTGGCCAAAACCAGATAATAAGGCCAAAAGAGAAGGTAGTGTTGGTGATGGGAGCAACCGGAAGCGGCAAAACAAGGTTGTCGATCGACCTAGCCACATGTTTTCCATCAGAAATAATAAACTCCGACAAAATACAAGTCTACTCAGGCTTGGACGTTGTCACAAACAAAGCAACAAAAGAAGAACAACGTGGGGTCCCACACCACTTGCTGGGGACACAGAACCCAAACACAGAGTTCACAGCCTCCGACTTCTGCCACATGGCATCACACGCCATTGAATCCATCACTCACCGCGAGAAGGTTCCAATAATCGTGGGAGGCTCCAACTCATACATTGAAGCCTTGGTCGACAAGTTCGGGCCACGTTACGATTGGTGTTGTCTCTGGGTTGATGTTTCCACGTCCGTGCTTCACTCCTACGTTGCGCAGCGCGTGGATCACATGCTTGGTGGCGGAATGGTGAACGAGTTGAGACCCTTTTTCAGTCCCAACGGGGATTACTCGAAGGGGATAAGAAAGGCAATTGGGGTGCCGGAATTTGATGCCTATTTTCGAAGGGAAGCGTTTTCGAGCAACGAGACGAGGGTGAGTTTGTTGCAGGATGCGGTGAGGGATGTGAAGAGGAACACGTGCCACCTAGCATGCAAGCAGATTGGGAGGATTCACAGGTTGAGGAGTGTTAAGGGGTGGAAGATTCACCGTGTTTGTGCCACTCCCGTGTTTCAGAAACGTGGCCAGGAAGCGAATGATGCGTGGAAGAACATTGTGGCGCAGCCTTGTGCCTCCATAGTTTCCCATTTTCTCTATAGTACTGCAAATCATGATTATCAACCTCTGGAGTTAATTCGTTAA 930 0.4871 MTMTMSRVMCRPTQPLKNVPSNSSISGQNQIIRPKEKVVLVMGATGSGKTRLSIDLATCFPSEIINSDKIQVYSGLDVVTNKATKEEQRGVPHHLLGTQNPNTEFTASDFCHMASHAIESITHREKVPIIVGGSNSYIEALVDKFGPRYDWCCLWVDVSTSVLHSYVAQRVDHMLGGGMVNELRPFFSPNGDYSKGIRKAIGVPEFDAYFRREAFSSNETRVSLLQDAVRDVKRNTCHLACKQIGRIHRLRSVKGWKIHRVCATPVFQKRGQEANDAWKNIVAQPCASIVSHFLYSTANHDYQPLELIR* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1281 309 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 26 300 - -
Gso3g1281 309 Gene3D - 35 294 IPR027417 -
Gso3g1281 309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 169 IPR027417 -
Gso3g1281 309 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 26 300 IPR039657 -
Gso3g1281 309 MobiDBLite consensus disorder prediction 1 28 - -
Gso3g1281 309 Pfam IPP transferase 148 244 - -
Gso3g1281 309 Pfam IPP transferase 71 145 - -
Gso3g1281 309 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1281 Gso-Chr3 38554699 38555941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1281 148 304 C2H2 Transcription Factor Family AT2G27760 29.891 2.54e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1281 K10760 - gmx:100799520 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1282 19 41394186 41395517 Gso3g1281 3 38554699 38555941 GST
Gso3g1281 3 38554699 38555941 Gso2g1233 2 15328894 15330330 PCT
Gso3g1281 3 38554699 38555941 Gso10g0219 10 2276337 2277717 PCT
Gso2g1233 2 15328894 15330330 Gso3g1281 3 38554699 38555941 PCT
Gso10g0219 10 2276337 2277717 Gso3g1281 3 38554699 38555941 PCT