Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1272 ATGGCTACAATCGTTCTCAGAAATTGCTCTTCCACTTCTCGGCGCCTCTTCCCCTTAACCTCTCAAATCCACTCTTCCTTCACTCGTTCCCCTCTCTCTCCTCCCGTTTTCACCAATGACTCCACATCTTCTTCTTCTTCTTCTTCTTCCAGTTCCAACCCCTGGTGGAGATCCATGGCCACCTTCACCAGAACGAAACCTCACGTTAATGTCGGAACTATTGGACACGTGGATCACGGGAAGACCACGCTTACTGCAGCAATCACCAGGGTGCTTGCGGATGAAGGGAAAGCTAAAGCTGTTGCCTTCGATGAAATCGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACGATTGCAACGGCACATGTGGAGTATGAGACTGCGAAAAGACATTATGCTCATGTGGACTGCCCTGGACACGCAGATTATGTTAAAAATATGATTACAGGAGCTGCCCAGATGGATGGAGGTATACTTGTTGTATCCGCACCTGATGGACCTATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTGGTGTGTTTTCTAAATAAAGTTGATGCAGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCTATCATTAGAGGTTCAGCATTGTCTGCCTTACAGGGTACAAATGATGAGATCGGAAGACAGGCCATCCTAAAATTAATGGATGCTGTGGATGAATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCTTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGGATCATTAAAGTTGGTGATGAAGTGGAGGTGTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAGGCTGGTGATAACGTGGGTCTTCTTCTCCGTGGTCTGAAGCGGGAAGACATTCAACGTGGTCAGGTGATTGCCAAACCTGGTTCTGTAAAAACATCCAAGAAATTTGAGGCAGAGATATATGTACTCACAAAGGATGAGGGAGGGCGACACACTGCTTTCTTCTCTAACTACAAACCTCAGTTTTACTTGAGGACTGCTGATGTCACTGGAAAAGTAGAGTTGCCCGAAAATGTTAAAATGGTTATGCCTGGAGACAATGTTACTGCCGTGTTTGAATTGATTTCAGCAGTTCCACTTGAAGCAGGACAAAGATTTGCCTTGAGAGAAGGTGGAAGAACAGTTGGTGCCGGTGTGGTGTCAAAAGTACTGAGCTAG 1365 0.463 MATIVLRNCSSTSRRLFPLTSQIHSSFTRSPLSPPVFTNDSTSSSSSSSSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRQAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADVTGKVELPENVKMVMPGDNVTAVFELISAVPLEAGQRFALREGGRTVGAGVVSKVLS* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1272 454 TIGRFAM small_GTP: small GTP-binding protein domain 69 205 IPR005225 GO:0005525
Gso3g1272 454 Pfam Elongation factor Tu GTP binding domain 66 259 IPR000795 GO:0003924|GO:0005525
Gso3g1272 454 Pfam Elongation factor Tu domain 2 283 353 IPR004161 GO:0005525
Gso3g1272 454 TIGRFAM EF-Tu: translation elongation factor Tu 58 453 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gso3g1272 454 SUPERFAMILY Translation proteins 263 359 IPR009000 -
Gso3g1272 454 Gene3D Translation factors 398 453 - -
Gso3g1272 454 PANTHER ELONGATION FACTOR TU 13 453 - -
Gso3g1272 454 PANTHER ELONGATION FACTOR TU-RELATED 13 453 - -
Gso3g1272 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 284 IPR027417 -
Gso3g1272 454 PRINTS GTP-binding elongation factor signature 70 83 IPR000795 GO:0003924|GO:0005525
Gso3g1272 454 PRINTS GTP-binding elongation factor signature 114 122 IPR000795 GO:0003924|GO:0005525
Gso3g1272 454 PRINTS GTP-binding elongation factor signature 134 144 IPR000795 GO:0003924|GO:0005525
Gso3g1272 454 PRINTS GTP-binding elongation factor signature 150 161 IPR000795 GO:0003924|GO:0005525
Gso3g1272 454 PRINTS GTP-binding elongation factor signature 187 196 IPR000795 GO:0003924|GO:0005525
Gso3g1272 454 Hamap Elongation factor Tu [tuf]. 57 454 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gso3g1272 454 CDD EF_Tu 67 261 IPR041709 -
Gso3g1272 454 CDD EFTU_II 269 357 IPR033720 -
Gso3g1272 454 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 363 453 IPR009001 -
Gso3g1272 454 Gene3D - 58 261 IPR027417 -
Gso3g1272 454 MobiDBLite consensus disorder prediction 26 54 - -
Gso3g1272 454 CDD EFTU_III 360 449 - -
Gso3g1272 454 Pfam Elongation factor Tu C-terminal domain 358 452 IPR004160 -
Gso3g1272 454 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 107 122 IPR031157 -
Gso3g1272 454 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 66 262 IPR000795 GO:0003924|GO:0005525
Gso3g1272 454 Gene3D Translation factors 264 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1272 Gso-Chr3 38434250 38438467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1272 64 452 Eukaryotic Initiation Factors Gene Family AT5G60390 30.594 5.26e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1272 K02358 - gmx:100791600 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1272 19 41279798 41284112 Gso3g1272 3 38434250 38438467 GST