Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1263 ATGGAGTTGTCTCCGTTTGTGATTTCGTTGGTGAAGAAAGGAGAAAGAGGGTATGGTGGTTGTGACAGCAAGTGGTCAGAGAAAGCAGAAGAGGAAAGCACATGGTGGTTATGCAATCGACGATCGAGAGCCGGTGAATGGACAAAGGTATCATGGAGTATAACTCTTCATCAACAATCTTCCCTGGCCGCAAACAACACCCTCCCATGTCCCCTGAACATAACCGTCCTCCGCGTGGTGAGCGGCGGGCGGCGGCCGTCGTTCGACTCGGGAACAAAGTGCCACTACATCCTGCAAGCCCTCCACCTCCTCCAGGCCGACTACCTCCGTCGCAGCAGCCTCTTCGTTCCGCCGCTAAACACCTCGGAGTCCTGCTGGAACACCTTTCAGTCCTTCATCAACGAGGCCGACCCCAGCATCTCCGACATCCGCTCCTCCTGCGGCTTCAGAACCGAGTGGATCTCCCAGGGCTGCATGAACATCACCACAAAACAACAATTCGAAGACATTGTTCCCCGCAACGCTATCCAACCCGTCCAAGATGACTGCAACCAACCCCTCGAGAACAACGCCCCCTGCGCCCTCTGCACCACCAAGCTCTCCAGCATGCTTTCCTACTTAACCGGAACAACCCAAGGTAACGTCACCGACTGCAGAGCCTATACTCAAATCTACGCCGCTTCTCTCTCTGATCAGTACGGTGTCACCGATCCCGGTACCTCCAAGTGCCTCTTCGGTCTCGATTTTTCCTCTTCCGGCTCCGGTGGTAAGCGACGAAGAACTATTGTTATTGCGGTTGTTTCCGTTTTCTGTGTGGTTTCTTTGTCTGTGTTTGCTTCCCTTTGGGCTTATTTAAGATTCAAGAAGAGGCTAGAGGTTGAGAAAAGGAAGGGTGCTGGAATATCTGAGTTAGGTTTGGGTTCTGGCTTGGATTCAATTAACCAGAGTACCACTTTGATTAGGTTCAGTTTTGATGAAATTAAAAAGGCTACCAGGAACTTCTCCAGGGATAACATTATTGGAAGTGGGGGTTATGGGAATGTTTATAAAGGGATGTTATTGGATGGTAGCCAAGTTGCTTTTAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTCACTCACGAGGTTGAGGTTATTGCGAGTGTGAGGCATGTGAATCTTGTTACCCTAAGAGGCTATTGTACTGCTACGACCAATTTGGAAGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAACGGGAGTCTTTATGATCATTTATTCGGTTCTGCTAAGAAGAATCTCACTTGGCCAATTCGTCAAAAGATTGCTCTAGGGACCGCTAGGGGGTTGGCTTATTTGCACTATGGAGCTCAACCTTCCATCATCCATAGGGATATTAAGGCTAGTAACATTCTTCTGGACCACAATTTTGAAGCCAAGGTTGCGGATTTCGGGTTGGCAAAGTTCAACCCTGAGGGGATGACTCACATGAGTACTAGAGTGGCTGGGACTATGGGATATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAGAGGAGTGATGTGTTCAGCTTCGGTGTTGTGCTTCTTGAGCTCCTGAGTGGGAGAAAGGCACTTCAAACCGATGATGATGGCCAACCCGCCGCACTCACTGACTTTGCTTGGTCGTTGGTTAGGAATGGTAGTGCTTTGGATGTTGTTGAAGATGGTATTCCAGAACCTGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGGTTGCTGTATTGTGTTCTCATCCTCAGCTATATGCTAGGCCTACAATGGATCAGGTTGTTAAGATGCTTGAGACTGATGAATCTGTGCCCTCTTTGATGGAAAGGCCAATTCCTTTTATTGCTGGGAGGCTTGATATTGAGAAATCTGCTCTGAGTAACTCGGGTCAGCTCTGTAGTCCTACTGGTTATCAAGCATATACATTACAAGCTCGACGCAAATCTAATACTAAGGAGGAAGAAGAAGAAGGAAGTTCGGTGGCTGAGACTGTGACCACGGATTGA 2037 0.4821 MELSPFVISLVKKGERGYGGCDSKWSEKAEEESTWWLCNRRSRAGEWTKVSWSITLHQQSSLAANNTLPCPLNITVLRVVSGGRRPSFDSGTKCHYILQALHLLQADYLRRSSLFVPPLNTSESCWNTFQSFINEADPSISDIRSSCGFRTEWISQGCMNITTKQQFEDIVPRNAIQPVQDDCNQPLENNAPCALCTTKLSSMLSYLTGTTQGNVTDCRAYTQIYAASLSDQYGVTDPGTSKCLFGLDFSSSGSGGKRRRTIVIAVVSVFCVVSLSVFASLWAYLRFKKRLEVEKRKGAGISELGLGSGLDSINQSTTLIRFSFDEIKKATRNFSRDNIIGSGGYGNVYKGMLLDGSQVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKNLTWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHNFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTDDDGQPAALTDFAWSLVRNGSALDVVEDGIPEPGPPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSLMERPIPFIAGRLDIEKSALSNSGQLCSPTGYQAYTLQARRKSNTKEEEEEGSSVAETVTTD* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1263 678 ProSitePatterns Protein kinases ATP-binding region signature. 340 362 IPR017441 GO:0005524
Gso3g1263 678 MobiDBLite consensus disorder prediction 654 678 - -
Gso3g1263 678 PANTHER OS01G0253100 PROTEIN 68 661 IPR045271 GO:0004714|GO:0006468
Gso3g1263 678 ProSiteProfiles Protein kinase domain profile. 334 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1263 678 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 68 661 - -
Gso3g1263 678 SMART serkin_6 334 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1263 678 Gene3D Phosphorylase Kinase; domain 1 308 413 - -
Gso3g1263 678 Pfam Protein tyrosine and serine/threonine kinase 337 608 IPR001245 GO:0004672|GO:0006468
Gso3g1263 678 CDD STKc_IRAK 340 609 - -
Gso3g1263 678 SUPERFAMILY Protein kinase-like (PK-like) 317 620 IPR011009 -
Gso3g1263 678 Gene3D Transferase(Phosphotransferase) domain 1 415 618 - -
Gso3g1263 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Gso3g1263 678 Pfam SPARK 68 218 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1263 Gso-Chr3 38318133 38323781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1263 60 653 Receptor kinase-like Gene Family AT2G48010 61.642 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gso3g1263 PK_Tyr_Ser-Thr 3.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1263 - - gmx:100786298 1325.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1265 19 41197409 41199588 Gso3g1263 3 38318133 38323781 GST
Gso3g1263 3 38318133 38323781 Gso2g1248 2 15516701 15519112 PCT
Gso3g1263 3 38318133 38323781 Gso10g0205 10 2124189 2126974 PCT
Gso2g1248 2 15516701 15519112 Gso3g1263 3 38318133 38323781 PCT
Gso10g0205 10 2124189 2126974 Gso3g1263 3 38318133 38323781 PCT