Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1262 ATGAAGGACGAGGTGGATTCCCCTTTTGGTGTTCTTGAGGACTATTTCAACTTCAAGAGTTCAGAATCAGAAACAAGCTCTTCCAAAGAACCAAGTACTATTGTGGATTCTGATAAGTTAAAACCAGGTTCTAGGTGGAATGCGTTTCTTCAATTGTTGAGGGTCAAATCGAAGCCAATAGCTACATTGCATCCTCTTAGTGTCCTCAAGCTTTCAAGAAGAATGAGCAGTAGCATGAGGGAGACTGTAATAGATGCAGATTCGTCCTTGCATAGGTCACCCTGGAAGATCTTCACTCACCATGAGATACAAATTGCAACCAATTACTTCATCCAAGAAAATTGTATTGGAAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATGGTCAGCTGGTAGCGATTAAAATGCTGACACGTGGAACAGAAAACGAAACTATAGGTGACTTCTTATCAGAACTTGGTATAATGGCTCATGTAAACCACTCCAACACTGCCAAGTTAGTTGGCTATGGGGTGGAGGGAGGAATGTATCTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAATGCTTAATGGTTCCAAGGAGAAACTACCATGGTCTTTTAGGCAGAAAATAGCATTAGGAACAGCTAAGGGTATAATGTATCTTCATGAAGGTTGTCAGAGAAGAATTATCCATAGAGATATAACAGCGGCAAATATCTTGCTTACTGAGAACTTTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAAAATTGGACCCATCACATTGTTTCAAAAATTGAAGGGACTTTTGGTTATCTTACTCCTGAATACTTGCTTCATGGGATAGTGGATGAAAAAACAGATGTATTTGCGTTTGGTGTAGTGCTATTAGAATTAGTCACAGGGAGACGAGCACTTGATCATTCACAACAAAGCCTTGTTTTGTGGGCAAAACCTTTGCTGAAAAAGAATTGTATTAGGGAGCTGATTGATCCTTCATTAGCCGATGATTTTGACTGTCGGCAGATTAAAATTATGCTCTTGGCAGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGCCCCTCTATGAAACAGGTTGTACAACTTTTGAATGGTAACCTTAGCTGCTTTAAGTTCACGAAGAAATCTCAACATCCATTGTTCCGAAAAGTCTTTCAAGAAGAGCTTCTTGACGCTGATTAA 1218 0.4031 MKDEVDSPFGVLEDYFNFKSSESETSSSKEPSTIVDSDKLKPGSRWNAFLQLLRVKSKPIATLHPLSVLKLSRRMSSSMRETVIDADSSLHRSPWKIFTHHEIQIATNYFIQENCIGKGGYAEVYKGCLPNGQLVAIKMLTRGTENETIGDFLSELGIMAHVNHSNTAKLVGYGVEGGMYLVLELSEKGCLASMLNGSKEKLPWSFRQKIALGTAKGIMYLHEGCQRRIIHRDITAANILLTENFEPQICDFGLAKWLPENWTHHIVSKIEGTFGYLTPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDHSQQSLVLWAKPLLKKNCIRELIDPSLADDFDCRQIKIMLLAASLCIQQSSIRRPSMKQVVQLLNGNLSCFKFTKKSQHPLFRKVFQEELLDAD* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1262 405 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 404 - -
Gso3g1262 405 Pfam Protein tyrosine and serine/threonine kinase 113 374 IPR001245 GO:0004672|GO:0006468
Gso3g1262 405 Gene3D Phosphorylase Kinase; domain 1 81 184 - -
Gso3g1262 405 ProSitePatterns Protein kinases ATP-binding region signature. 116 138 IPR017441 GO:0005524
Gso3g1262 405 Gene3D Transferase(Phosphotransferase) domain 1 187 393 - -
Gso3g1262 405 ProSiteProfiles Protein kinase domain profile. 110 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1262 405 PANTHER OS08G0249100 PROTEIN 1 404 - -
Gso3g1262 405 ProSitePatterns Tyrosine protein kinases specific active-site signature. 229 241 IPR008266 GO:0004672|GO:0006468
Gso3g1262 405 SUPERFAMILY Protein kinase-like (PK-like) 90 375 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1262 Gso-Chr3 38309949 38313218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1262 97 371 Trihelix Transcription Factor Family AT1G68690 41.901 1.12e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso3g1262 PK_Tyr_Ser-Thr 7.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1262 - - gmx:100787372 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1263 19 41184827 41188306 Gso3g1262 3 38309949 38313218 GST
Gso3g1262 3 38309949 38313218 Gso2g1249 2 15528942 15532897 PCT
Gso3g1262 3 38309949 38313218 Gso10g0204 10 2113654 2117408 PCT
Gso2g1249 2 15528942 15532897 Gso3g1262 3 38309949 38313218 PCT
Gso10g0204 10 2113654 2117408 Gso3g1262 3 38309949 38313218 PCT