Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1241 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCACCGGGTCCCCGGCAAATCAATACCCAACTGCACCACCTAGAGGGGGTAACACATACGGTGGAGGAGGTAATGATAGAGGAGAGCCTAGGGGCAATGTTGCAAAGAGTGGTGCCCCGCAGAAAGTATTGCCAATTGAGATACCCTCTATGCCGTTGGATGAGTTAAACAGGTTAACAGGGAACTTTGGTACAAAGGCTTTTATTGGCGAAGGTTCATATGGACGAGTTTTCTATGCAAAATTGAGTGATGGCACTGATGCTGCAATTAAGAAGCTGGATACCAGTTCTTCCCCGGAACCTGACTCGGATTTTGCGGCTCAGTTATCGATTGTTTCGAGAATGAAGCATGACAATTTTGTGGAGTTGATTGGATATTGTCTAGAGGCAGATAACAGACTTTTGGTTTATCAATATGCAAGTTTGGGTTCTTTGCATGATGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCTGGTCCAGTTTTAAGCTGGAACCAGAGAGCAAAAATTGCATTTGGCGCAGCAAAAGGACTTGAGTTTCTTCATGAAAAGGTTCAGCCTTCTATCGTTCACCGCGATGTTAGATCCAGCAATGTCTTACTATTCAATGACTATGAGGCCAAGATAGCTGATTTCAGCTTGACAAATCAGTCTTCTGACACAGCCGCTAGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCCCCAGAGTATGCCATGACTGGACAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACTGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGACAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTTAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGATTATCCGCCAAAGGCTATTGCTAAGTTGGCTGCTGTGGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCAGACCAAACATGACCATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATGCAAAACCGTCTGGTCCCGATCCTCATGCTTGA 1101 0.4532 MLCCGGAEEESTGSPANQYPTAPPRGGNTYGGGGNDRGEPRGNVAKSGAPQKVLPIEIPSMPLDELNRLTGNFGTKAFIGEGSYGRVFYAKLSDGTDAAIKKLDTSSSPEPDSDFAAQLSIVSRMKHDNFVELIGYCLEADNRLLVYQYASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPSGPDPHA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1241 366 ProSiteProfiles Protein kinase domain profile. 73 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1241 366 Pfam Protein tyrosine and serine/threonine kinase 77 351 IPR001245 GO:0004672|GO:0006468
Gso3g1241 366 ProSitePatterns Tyrosine protein kinases specific active-site signature. 201 213 IPR008266 GO:0004672|GO:0006468
Gso3g1241 366 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 365 - -
Gso3g1241 366 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Gso3g1241 366 SMART tyrkin_6 73 351 IPR020635 GO:0004713|GO:0006468
Gso3g1241 366 Gene3D Transferase(Phosphotransferase) domain 1 151 360 - -
Gso3g1241 366 SUPERFAMILY Protein kinase-like (PK-like) 52 351 IPR011009 -
Gso3g1241 366 Gene3D Phosphorylase Kinase; domain 1 46 149 - -
Gso3g1241 366 MobiDBLite consensus disorder prediction 1 49 - -
Gso3g1241 366 PANTHER OS03G0226300 PROTEIN 1 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1241 Gso-Chr3 38048892 38052182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1241 64 352 Receptor kinase-like Gene Family AT4G02010 47.603 7.11e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gso3g1241 PK_Tyr_Ser-Thr 7.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1241 - - gmx:100786291 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1241 3 38048892 38052182 Gso3g1241 3 38048892 38052182 ECH
Gso19g1245 19 40916174 40919541 Gso3g1241 3 38048892 38052182 GST