Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1240 ATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTATGAAATGGGAAAAGCTAAATCTGAGGCCAAGAGTAACAGTACATCTACAAAATCTAGCATTGGGTTGAGTGGAAAGAGTGGAATTAGTTCAAACAATGGCGTGTATGAATTACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCGTCCTGCCATCATGATCTTGGGAATATAAGATGTTTGGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTTGGTTGCCATGATATATTCCCGTACTATACTAAGCTGAAGCATGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGATATTCCTACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATAGTTTTGGAAGACATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCGGCTCCAGTGTATATGGCTTTTTTGCGATTCATGGGTGATGACAATGAAGCAAAGAAATTCAGCTACAGCTTGGAGGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAAGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAAGAATGA 930 0.4194 MAPGSSVFKEVLESHLMSSDYEMGKAKSEAKSNSTSTKSSIGLSGKSGISSNNGVYELLGCPVCKNLMYPPIHQCPNGHTLCSHCKVEVHNICPSCHHDLGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWREE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1240 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 168 IPR013083 -
Gso3g1240 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Gso3g1240 309 MobiDBLite consensus disorder prediction 23 43 - -
Gso3g1240 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 113 IPR013083 -
Gso3g1240 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gso3g1240 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 302 IPR008974 GO:0005515
Gso3g1240 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Gso3g1240 309 MobiDBLite consensus disorder prediction 28 43 - -
Gso3g1240 309 CDD RING-HC_SIAHs 61 96 - -
Gso3g1240 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Gso3g1240 309 SUPERFAMILY RING/U-box 53 103 - -
Gso3g1240 309 SUPERFAMILY TRAF domain-like 114 306 - -
Gso3g1240 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1240 Gso-Chr3 38040248 38044839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1240 1 309 C3H Transcription Factor Family AT2G41980 79.935 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1240 K04506 - gmx:100500061 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1240 3 38040248 38044839 Gso3g1240 3 38040248 38044839 ECH
Gso19g1244 19 40909233 40913779 Gso3g1240 3 38040248 38044839 GST