Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1235 ATGGAGCTAGCTTTGAGCTTAGGCGACACACCCAAAACCGTCTCTTTGGCCACAAAAAATGATTCAGTGAGTTTGTGCATAGCACTGGCTGATGACAAAAGGGGTTCTTCATATCCACCCGTTCAGCTCGACCTTCTTCCTTCAACACCAGTTCTTCCTTTTTCACACTCACACCTTCGAATTCCATGGCTCTCCGATGCACTGGGTATGGAACGTGTGACATCAGAGATTCCGGTGAGGGTGGTGGATGACACCGACGATGGTGCTGCACTTTCATCTCCCAACAGTGCAGTGTCATCTTTTCAGATGGATTATTGTGTCAGGAACAATAGAAAGTCTAGTGAAGGTGCCAGCGATGACGACGAAAATGGCTCATCAAGGAAGAAACTAAGACTCTCCAAACAACAATCAGCTTTCCTCGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAAAAACTTGCACTTGCAAAACAGTTAAATCTCCGTCCCCGTCAGGTGGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACAGAAGTGGATTGTGAGTACTTAAAGAGATGCTGCGAGAGTCTGACAGAAGAGAATAGGAGATTGCAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACATGTCAACCGTTTTTCATGCAGCTTCCAGCTACCACCCTCACCATGTGTCCCGCTTGTGAACGCGTCGCCACCAACACCGCCACCGGAGCCGCCGCCGCCGCCGCTTCCACCACCACCACCAATAATAATAATGCCTCTGCCCCCACCAACAATAATAGTGTTTCTCAAATCTCTGCTGCGATGTCTGTTGACAAGCCCAGAATATTGCCCTGA 867 0.4833 MELALSLGDTPKTVSLATKNDSVSLCIALADDKRGSSYPPVQLDLLPSTPVLPFSHSHLRIPWLSDALGMERVTSEIPVRVVDDTDDGAALSSPNSAVSSFQMDYCVRNNRKSSEGASDDDENGSSRKKLRLSKQQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTCQPFFMQLPATTLTMCPACERVATNTATGAAAAAASTTTTNNNNASAPTNNNSVSQISAAMSVDKPRILP* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1235 288 CDD bZIP 176 215 - -
Gso3g1235 288 PANTHER - 33 262 - -
Gso3g1235 288 SUPERFAMILY Homeodomain-like 117 184 IPR009057 -
Gso3g1235 288 Coils Coil 189 216 - -
Gso3g1235 288 MobiDBLite consensus disorder prediction 256 288 - -
Gso3g1235 288 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Gso3g1235 288 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Gso3g1235 288 MobiDBLite consensus disorder prediction 256 278 - -
Gso3g1235 288 MobiDBLite consensus disorder prediction 111 132 - -
Gso3g1235 288 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 33 262 - -
Gso3g1235 288 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Gso3g1235 288 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Gso3g1235 288 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Gso3g1235 288 Gene3D - 119 188 - -
Gso3g1235 288 SMART HOX_1 125 187 IPR001356 GO:0003677
Gso3g1235 288 MobiDBLite consensus disorder prediction 113 129 - -
Gso3g1235 288 CDD homeodomain 127 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1235 Gso-Chr3 38000659 38002675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1235 119 240 Homeobox Transcription Factor Family AT4G37790 79.508 1.47e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso3g1235 Homeodomain 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1235 K09338 - gmx:100784703 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1235 3 38000659 38002675 Gso3g1235 3 38000659 38002675 ECH
Gso19g1238 19 40865235 40867155 Gso3g1235 3 38000659 38002675 GST
Gso3g1235 3 38000659 38002675 Gso2g1458 2 28505571 28508183 PCT
Gso2g1458 2 28505571 28508183 Gso3g1235 3 38000659 38002675 PCT