Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1234 ATGGAGGAAGAGACCTCCGATGCAATGAACCTTGATTTGAATCTGGGCCCAGGCCCAGAACCCGAAACTGGGCCCATAAGCAATGAAGCTGTGAACTTGGACGATTGGATAGGGGAGCCTCTTCAGAGAATCAGCGAAGCTGTGAGGTATAGGGCACGGCAACGGTGGAGATGGCGCCAACTTCCGCTACCGCCTCCTGAATTTCATGCTCACTTTCCAACTGAAGCTACGCGGCATTTTCAAATACCGCCTGAGGCTCACAATATCTCCGTGGAATTGAACCACTTTTTGGTCAATTCTGGCAATGGAAGCGCCTTGCAGGCCGGGGAAGGCAGTGTGGCGGCCGAGGAGAGAATGGAGGAGGTGCCGAAGGCTTGTGAGAATATCAATGGTGTGGCAGAGGATGAGGCTTCGCAGAAGAAGGGTGATATAGAAAAGGGTAGTGGCAATGATGGGGACTTTTTTGATTGTAACATCTGTTTGGACCTGGCTAGGGATCCTGTTGTAACTTGTTGTGGTCATTTGTTTTGTTGGTCATGTTTGTATAGGTGGCTGCATCTGCATTCGGATGCGAAGGAATGTCCAGTTTGTAAGGGAGAGGTGACACTTAAAAGTGTTACCCCAATATATGGCCGTGCGAACAATGTCCGTGGTCCTGAGGAGGATTCTGCACTTAAGATCCCTCCCAGGCCCCAAGCGAAGAGAGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGAGCTTACACGCGATTTGGTTCAGCCACCTGAACCGGATGCTGCCCGTGAAACAGCTGAGAGAACTACTTCCTTGCTAAGGTTCTTGACTGCGCAAGGGATACGTAGAGAGCATCAGAATCTAGTGGCACCCCCAGAGGATGTAATGGGTTTGGCACAAAACAATGTTAATACTTCTGAGGCAGGGGATCCCCGGACTAGGGTGCAGTCCCATTTGCTTCGAAGAACACAATCACACAGAGCAACACTTTCTACTCTTTCATCAGCACTAACTTCCGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCAATCCATTAGGTAGGAACCAAGAACAACCTCCTCCTCCAGTTGAAGACAGAGATTCCTTTTCAAGCATTGGTGCTGTTATAAATTCAGAGAGTCAACTGGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACATCCTCTTCTAGGAGGAGGAACGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCTCGTGCTCCAAGGCGGAGACGTTTGAACTGA 1329 0.4891 MEEETSDAMNLDLNLGPGPEPETGPISNEAVNLDDWIGEPLQRISEAVRYRARQRWRWRQLPLPPPEFHAHFPTEATRHFQIPPEAHNISVELNHFLVNSGNGSALQAGEGSVAAEERMEEVPKACENINGVAEDEASQKKGDIEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWSCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRANNVRGPEEDSALKIPPRPQAKRVESLRQTIQRNAFALPVEEMIRRLGSRIELTRDLVQPPEPDAARETAERTTSLLRFLTAQGIRREHQNLVAPPEDVMGLAQNNVNTSEAGDPRTRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPPVEDRDSFSSIGAVINSESQLDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1234 442 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Gso3g1234 442 PANTHER OS01G0830200 PROTEIN 13 442 - -
Gso3g1234 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 442 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso3g1234 442 MobiDBLite consensus disorder prediction 420 442 - -
Gso3g1234 442 MobiDBLite consensus disorder prediction 1 22 - -
Gso3g1234 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 246 IPR013083 -
Gso3g1234 442 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Gso3g1234 442 CDD RING-HC_AtRMA_like 155 199 - -
Gso3g1234 442 SMART ring_2 157 197 IPR001841 -
Gso3g1234 442 SUPERFAMILY RING/U-box 152 211 - -
Gso3g1234 442 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Gso3g1234 442 MobiDBLite consensus disorder prediction 409 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1234 Gso-Chr3 37987430 37989776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1234 1 433 C3H Transcription Factor Family AT3G58030 52.876 5.02e-138 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1234 K10666 - gmx:100782225 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1234 3 37987430 37989776 Gso3g1234 3 37987430 37989776 ECH
Gso19g1237 19 40849557 40851881 Gso3g1234 3 37987430 37989776 GST