Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1225 ATGGGAATGGAGCGAGTGCAGTGTGCCTATGCCTCTCTGGACGAAGCGTTCGAAATAGGGAAAGAGGCGTATCAGGGGCAGCAGTACAGCCAGATTTACTTCGCGCGCCTTCATTTGATGCGAACACTTTTATATTCCCTCGTTCCTCATTGGAAACCCAATTTTCCCGTGTGCACAGTGCTGGGATTGGAAGAGGGGAAGGAGTGTGTCATTGTTGGAACCCTCTATAAACACATGAAGCTCAAACCTTGCATTCTTGATGAGTATTCCAAGGAGAGATCAGTGGTTCCACTTGTCAAGCCACATAACTTCATACACCCGGATGATCACCTAGTTTTGGAAGATGAAAGCGGGCGGGTTAAGCTCAGTGGGAGTATCATTTTGCCATCTGAATATGTAACAGGAATTGTGGTTGCTTTACTTGGAAAGGAAACGGGGGCAGGTGACTTTTTGGTTCAGGATGTCCTGGATGCTGGCTTACCACCACAGATAGAATTCCCCCTTAAACCAAGGGAAGACAAGTATGTTGTTCTTGTGTCAGGGTTAAGTGTTGGGAGCAGCAGCTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACAGGGCATTTAGGAGATGAGAAGGAGCAAAGTATCGCATCACAAATTGTTCGAGTTGTCTTTGCTGGAAATTTAGTCGAGATACCTCGCAGACTTCTTAATGGACAGAATTTGGCGTCTAAGGATCTCTCAAGGATGGCTGAGCCAATAAAGGAGCTAGATATTCTGTTGAGTCAGATAGCTGCTGGCTTGCCTTTGGATATCATGCCAGGACCCAGTGACCCTGCTAATTTCTCACTACCACAGCAGTCATTGCATAGATGCCTTTTCCCTGGGTCATCGGCATATAATACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGGTTGATAATGTCAGATTTCTTGGGACATCGGGTCAAAATGTAGATGATCTTGAGAAGTATTCAGAGGCAAAAGATAAACTTGAATTCATGGAAAGGACATTAAGATGGAGGCATTTGGCACCCACTGCTCCTAATACTCTTGGATGCTATCCTTATACTGATAAGGATCCTTTCTTCATTGAGAGCTGTCCTCATGTTTACTTTGTTGGAAATCAAGATAAATTTGAAACTCGTGTCATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGCTAAATCTGAGGGACCTTGATTGTCATGCTCTCAGTTTTGGAACGCAATTCAGCTCATAA 1302 0.437 MGMERVQCAYASLDEAFEIGKEAYQGQQYSQIYFARLHLMRTLLYSLVPHWKPNFPVCTVLGLEEGKECVIVGTLYKHMKLKPCILDEYSKERSVVPLVKPHNFIHPDDHLVLEDESGRVKLSGSIILPSEYVTGIVVALLGKETGAGDFLVQDVLDAGLPPQIEFPLKPREDKYVVLVSGLSVGSSSSNPLQFQLLIDHITGHLGDEKEQSIASQIVRVVFAGNLVEIPRRLLNGQNLASKDLSRMAEPIKELDILLSQIAAGLPLDIMPGPSDPANFSLPQQSLHRCLFPGSSAYNTFRSCTNPHCFEVDNVRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPYTDKDPFFIESCPHVYFVGNQDKFETRVIKGSEGQLVRLICVPKFSETGVAVMLNLRDLDCHALSFGTQFSS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1225 433 Pfam DNA polymerase alpha/epsilon subunit B 176 386 IPR007185 GO:0003677|GO:0006260
Gso3g1225 433 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 4 427 IPR024826 -
Gso3g1225 433 CDD MPP_PolD2_C 190 427 IPR041863 -
Gso3g1225 433 Pfam DNA polymerase delta subunit OB-fold domain 28 155 IPR040663 -
Gso3g1225 433 Gene3D - 167 432 - -
Gso3g1225 433 Gene3D - 35 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1225 Gso-Chr3 37899476 37906804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1225 4 432 Core DNA Replication Machinery Family AT2G42120 77.156 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1225 K02328 - gmx:100780072 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1225 3 37899476 37906804 Gso3g1225 3 37899476 37906804 ECH
Gso19g1225 19 40753534 40760951 Gso3g1225 3 37899476 37906804 GST