Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1222 ATGAGACAGAAGGTGCTGGAGATGATCCGGTTCCTTTTTATTACCCTGTATCGTCCCAACTATTTTCCGCTCTCCTTGCTCCAAAACCCCTTATTCAGGGTCACCGCTGTTAGGGTTAGGGTTAGGGTTTTGCCGCACATTCTTTCTCTAGCAATCTTCTTCTACCACTTTCCCCTCATTCTCTCTCTTAGTCTCTTCAATTGTAAGTTTTTTGCGCTAGGGTTTCCTCTGCTATCTCTTGTACTCGAAGCTCGTTCCTTTTTCCGGATCTCGATCTATGGATATCCGCAAGAGGGGAAGACCCGAACCCGGCTTCAGCTTAAATGGTGGATTCAAGAAATCCAAGCAAGCACTGCTGGTTGCCCATTCGGTGAGGGCTGCCACTTCCTGCACTATGTTCCCGGTGGTTATAATGCAGTTGCCCATATGATGAATCTAACACCTGCAGCACCTCTTCCACCAACAAGAAATGTTGCAGCTCTGCCTCATGTACCTAATGGGTCTGCACCATCTGCCGTTAAGACCCGCATATGCAACAAGTTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCTCATGGTGAATGGGAACTTGGCAAACACATTGCTCCATCATTTGATGATCATCGTGCCATGGGACCCCCTGGAGCAGGTCGTCTTGCTGGTCGAATGGAGCCTCCTGGTCCTGCCGCAAGTTTTGGTGCCAATTCCACAGCGAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATCTGCCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATCAAGGAAGCAAGTAACATGGTAAAGGATTTACTTTTGACCCTGCAAATGTCTGCACCACCTAAAACAACCCCGGGTGTTCCTGGCGCACCTGCCTCTCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTGCAAAAGGGTCTTGCACGTTTGGAGATAGATGTCACTTTGCACATGGAGCTTCTGAATTGCGTAAATCAGGAGTATGA 1104 0.4719 MRQKVLEMIRFLFITLYRPNYFPLSLLQNPLFRVTAVRVRVRVLPHILSLAIFFYHFPLILSLSLFNCKFFALGFPLLSLVLEARSFFRISIYGYPQEGKTRTRLQLKWWIQEIQASTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPLPPTRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRAMGPPGAGRLAGRMEPPGPAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPASHGSNFKTKLCENFAKGSCTFGDRCHFAHGASELRKSGV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1222 367 ProSiteProfiles Type-1 KH domain profile. 240 304 - -
Gso3g1222 367 CDD KH-I 242 305 - -
Gso3g1222 367 ProSiteProfiles Zinc finger C3H1-type profile. 333 360 IPR000571 GO:0046872
Gso3g1222 367 SUPERFAMILY CCCH zinc finger 171 203 IPR036855 GO:0046872
Gso3g1222 367 Pfam RNA-binding, Nab2-type zinc finger 121 131 - -
Gso3g1222 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 334 358 IPR000571 GO:0046872
Gso3g1222 367 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 174 199 IPR000571 GO:0046872
Gso3g1222 367 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 117 366 - -
Gso3g1222 367 Gene3D - 332 365 - -
Gso3g1222 367 Gene3D - 167 204 - -
Gso3g1222 367 Gene3D K Homology domain, type 1 236 331 IPR036612 GO:0003723
Gso3g1222 367 SMART kh_6 239 309 IPR004087 GO:0003676
Gso3g1222 367 Pfam KH domain 243 305 IPR004088 GO:0003723
Gso3g1222 367 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Gso3g1222 367 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 229 312 IPR036612 GO:0003723
Gso3g1222 367 SUPERFAMILY CCCH zinc finger 332 363 IPR036855 GO:0046872
Gso3g1222 367 SMART c3hfinal6 333 359 IPR000571 GO:0046872
Gso3g1222 367 SMART c3hfinal6 172 199 IPR000571 GO:0046872
Gso3g1222 367 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 117 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1222 Gso-Chr3 37876191 37879929 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso3g1222 KH_1 5.1e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1222 - - gsj:114406775 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1222 19 40726385 40729752 Gso3g1222 3 37876191 37879929 GST
Gso3g1222 3 37876191 37879929 Gso2g1479 2 29391859 29397095 PCT
Gso2g1479 2 29391859 29397095 Gso3g1222 3 37876191 37879929 PCT