Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1220 ATGGATATCCGCAAGAGGGGAAGACACGAAACCGGCTTCAGCTTAAATGGAGGATTCAAGAGATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCCGGTGGTTATAATGCAGTTGCCCATATGATGAATTTAACACCTGCAGCACCTCCTCCACCATCAAGAAATGTTGCAGCTCTGCCTCATGTACCTAATGGGTCTGCACCATCTGCCGTTAAGACCCGCATATGCAACAAGTTTAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCTCATGGTGAATGGGAACTTGGCAAACACATTGCTCCATCATTTGATGATCATCATGCCATGGGACCCCCTGGAGCAGGTCGTCTTGCTGGTCGAATGGAGCCTCCGGGTCCTGCCGCAAGTTTTGGTGCCAATTCCACAGCGAAGATCAGCGTAGAAGCTTCCCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAACAGATCTGCCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAAGTTTTGAGCAAATCAAGGAAGCAAGTAACATGGTAAAGGATTTACTTTTGACCCTGCAAATGTCTGCACCACCTAAAACAACCCCGGGTGTTCCTGGTGCACCTGCCTCTCATGGAAGCAATTTTAAGACGAAGCTGTGTGAGAATTTTGCAAAAGGGTCTTGCACGTTTGGAGATAGATGTCACTTTGCACATGGAGCTTCTGAATTGCGTAAATCAGGAGTATGA 888 0.4685 MDIRKRGRHETGFSLNGGFKRSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLTPAAPPPPSRNVAALPHVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHHAMGPPGAGRLAGRMEPPGPAASFGANSTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSAPPKTTPGVPGAPASHGSNFKTKLCENFAKGSCTFGDRCHFAHGASELRKSGV* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1220 295 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 240 IPR036612 GO:0003723
Gso3g1220 295 MobiDBLite consensus disorder prediction 17 31 - -
Gso3g1220 295 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Gso3g1220 295 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Gso3g1220 295 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Gso3g1220 295 SMART c3hfinal6 100 127 IPR000571 GO:0046872
Gso3g1220 295 Pfam KH domain 171 233 IPR004088 GO:0003723
Gso3g1220 295 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Gso3g1220 295 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Gso3g1220 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Gso3g1220 295 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 286 IPR000571 GO:0046872
Gso3g1220 295 SMART kh_6 167 237 IPR004087 GO:0003676
Gso3g1220 295 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 294 - -
Gso3g1220 295 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Gso3g1220 295 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Gso3g1220 295 MobiDBLite consensus disorder prediction 1 31 - -
Gso3g1220 295 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 294 - -
Gso3g1220 295 SUPERFAMILY CCCH zinc finger 99 131 IPR036855 GO:0046872
Gso3g1220 295 Gene3D - 95 132 - -
Gso3g1220 295 Gene3D - 260 293 - -
Gso3g1220 295 CDD KH-I 170 233 - -
Gso3g1220 295 SUPERFAMILY CCCH zinc finger 260 291 IPR036855 GO:0046872
Gso3g1220 295 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Gso3g1220 295 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1220 Gso-Chr3 37864990 37868755 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso3g1220 KH_1 3.6e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1220 - - gmx:100778470 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1220 3 37864990 37868755 Gso3g1220 3 37864990 37868755 ECH