Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1216 ATGAATGAGAACAAAATTGATTGGGGAGGATTGATTCAACAAAGTCATGTACTAAGTGGGGATTTTAATTCTGAGTTTGGCAATCGTTACTGTCAATATTTTGATATCAGACAAGCTTGGAATATGGGACCACTTGCCATGGTTGGAGGAGAAGCCATAGATAATGAGTTACAAAACATAGGCCATGCCAAATCATCTGGCACCATTATGAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGAGTTTGCAGAATATGATTGCCAAGTTGGTATTCACTCTTTGAGCTCTCAGTTATGCAAGATTAATGATTTGGAGTTCCCCTTGTATCAATCTCCAAGGGAAAACCTTTTCTTGGATTCAGCAAACCAATCTGAAACCAACTTTGATTTATCAAACACTTTGCAATCCATAGTGAAATCTCAACTGAATAGTGCTAATCAATGCAGTAGATCCCCTGAAAAGTCCAATAAAATTTCATGTGGGAATTTTCACAGCACCAAGTTCCTTCCGGTTGAACAACAGAAGTTGTTCATTGATGGTCTTATCAGTGGCTCATCATTTCCTAACAAAGGAAATCAAGACCATATGCTGAGATTCTCTTCTCAGATTGAGAGGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCCACTATTGGAAACTCTGCTTCTAATGTGGCGGCCGTAGTGTCAAGTAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCGCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGAACACTGATGGTTTGACTATCTTCCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCTAAATTCATTCCAGAACCCAGTCACGGGAAATCTGACAAAAGAACCCACACAAAGGATGTGCATCATCTTGATGTCAAAACTGGCATACAAATTAGAGAGGCACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTGCGAATCGAGGAACAAGGCAGGCAACTAAAGAAAATGTTCGACCAGCAACAGAAGACAAGTAATGACGTCTCTAATACTCAGAATTCAACCATTGAAGAGACATCAATTAGTCATAAAGACGGTGAAAATGCTTCCGAAGGGGCTAACAACAATTCCTTCTTCCCTTCCAAGACCTCTCCAAGCCAATAA 1242 0.3994 MNENKIDWGGLIQQSHVLSGDFNSEFGNRYCQYFDIRQAWNMGPLAMVGGEAIDNELQNIGHAKSSGTIMSRFESPASAFYAAENCMEFAEYDCQVGIHSLSSQLCKINDLEFPLYQSPRENLFLDSANQSETNFDLSNTLQSIVKSQLNSANQCSRSPEKSNKISCGNFHSTKFLPVEQQKLFIDGLISGSSFPNKGNQDHMLRFSSQIERLSPTLSAGSVSTIGNSASNVAAVVSSKTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMNTDGLTIFHVKSHLQKYRIAKFIPEPSHGKSDKRTHTKDVHHLDVKTGIQIREALKLQLDAQRCLHEQLEIQRKLQLRIEEQGRQLKKMFDQQQKTSNDVSNTQNSTIEETSISHKDGENASEGANNNSFFPSKTSPSQ* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1216 413 MobiDBLite consensus disorder prediction 363 385 - -
Gso3g1216 413 MobiDBLite consensus disorder prediction 362 413 - -
Gso3g1216 413 MobiDBLite consensus disorder prediction 392 413 - -
Gso3g1216 413 Pfam Myb-like DNA-binding domain 243 292 IPR001005 -
Gso3g1216 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 38 413 IPR044848 GO:0003700
Gso3g1216 413 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 239 294 IPR006447 GO:0003677
Gso3g1216 413 SUPERFAMILY Homeodomain-like 237 293 IPR009057 -
Gso3g1216 413 Gene3D - 238 297 - -
Gso3g1216 413 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 38 413 - -
Gso3g1216 413 Pfam MYB-CC type transfactor, LHEQLE motif 323 370 IPR025756 -
Gso3g1216 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 296 IPR017930 -
Gso3g1216 413 Coils Coil 326 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1216 Gso-Chr3 37807152 37810675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1216 227 388 G2-like Transcription Factor Family AT3G04450 51.497 1.77e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso3g1216 Myb_DNA-binding 9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1216 - - gmx:100527257 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1216 3 37807152 37810675 Gso3g1216 3 37807152 37810675 ECH
Gso19g1219 19 40666585 40670851 Gso3g1216 3 37807152 37810675 GST