Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1214 ATGGAGGATTTCAAGAAGAGAAAGCTGGAGCTGGACGAAGCAGGTGGCGACGGTGATTTTTCTTCCAAGGAAGAGCTTCGCTTCCTCATCGAACCTCTCGCTAAACCCCAGCTCGTCGATCTTCTTGCCAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGCCCATCGAAAGCTTTTTGTCCGTGGCTTGGCCTGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGAGCTGTGATCTATGATAAAGTGACAGGAAAATCCCGTGGCTATGGATTTATAACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCCCCTAGCAAGTTAATCGATGGGAGATTGGCTGTCTGTAATCTAGCTTGTGAGAGTCTAAGTGGAACAAGTAGTGCTCCTGATCTTTCCCTGAGGAAGCTTTACATTGGAAGCTTATCACCAGAAGTCACAAGTGAAATTCTCCTTAACTATTTTGCAAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAGGGATACAAATGAATCACGTGGTTTTGGCTTTGTCACATACAAGACAGCGGAGGCTGCGAAGAAGGCCATAGATGACCTAGAAAAGACACTTGGGGGAAGAAATATAGTTGTAAAATATGCTGATTCCCAAAAAGGTAAAACTGGCCAGCCACCATTTCCTGCTGGAGTGGTTCCGATGGCAGCATTACCTATGAACCCAGGATATATGCAGCAGCCTGGAAAAGCTAATGTTAGTTCAAGGCCCCCAATCAATTACAGTTACCCCCAAACTGTAGCACCATATTCTGCACTTCCTTATCCAAACCCTCCCACTGCTCCCTCTCCTTATCCGACACAAGGGCAGATTCCTTATCCTCAAGTTTCTGCAAAGAAAGACCGACATGGGTTTCTGCCTACTCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1023 0.4467 MEDFKKRKLELDEAGGDGDFSSKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKVTGKSRGYGFITFKNMESTQQALRAPSKLIDGRLAVCNLACESLSGTSSAPDLSLRKLYIGSLSPEVTSEILLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDLEKTLGGRNIVVKYADSQKGKTGQPPFPAGVVPMAALPMNPGYMQQPGKANVSSRPPINYSYPQTVAPYSALPYPNPPTAPSPYPTQGQIPYPQVSAKKDRHGFLPTQPVGMNNYPYYYPKQ* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1214 340 Gene3D - 145 243 IPR012677 -
Gso3g1214 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 167 IPR000504 GO:0003723
Gso3g1214 340 MobiDBLite consensus disorder prediction 291 306 - -
Gso3g1214 340 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 18 340 - -
Gso3g1214 340 SUPERFAMILY RNA-binding domain, RBD 60 144 IPR035979 GO:0003676
Gso3g1214 340 CDD RRM_RBM24_RBM38_like 67 142 - -
Gso3g1214 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
Gso3g1214 340 SUPERFAMILY RNA-binding domain, RBD 152 247 IPR035979 GO:0003676
Gso3g1214 340 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 18 340 - -
Gso3g1214 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 227 IPR000504 GO:0003723
Gso3g1214 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 135 IPR000504 GO:0003723
Gso3g1214 340 Gene3D - 58 144 IPR012677 -
Gso3g1214 340 MobiDBLite consensus disorder prediction 291 311 - -
Gso3g1214 340 SMART rrm1_1 159 231 IPR000504 GO:0003723
Gso3g1214 340 SMART rrm1_1 68 140 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1214 Gso-Chr3 37790038 37794187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1214 150 242 C2H2 Transcription Factor Family AT2G19380 35.484 1.68e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1214 3 37790038 37794187 Gso3g1214 3 37790038 37794187 ECH
Gso19g1216 19 40651991 40656101 Gso3g1214 3 37790038 37794187 GST