Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1212 ATGGCTTCAGACGCAAAACTCTCATCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTTTTGCTACTCCCGCTACCTCTCTTACTTCTTCTGCTACTACTGCTACCACTGTTACTTCTTCTTCTTCTTCCTCTTCAAGAAAAGGAAGAGGTGGTTCTGTTCAACCAGCTCAACCTCCAAGGTGTCAAGTTGAAGGGTGCGAAGTAGATCTGAGTAATGCAAAAACTTACTATTCTAGACACAAAGTTTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGGTTTCATCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCCCTCTTGACCTCTCGCTATGCTAGACTTTCTTCATCTGCTTTTGATCATAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGGCTTCATACCCAAAACTTAGTCTGAGAAATTCACTTCCAACTCCTAGGTCATCCGAGCTAGCGCCTGGAAATCAAACCTCCACCCTCAGCTGGCACGGGAACTCGGAGACATCATCTGACCTTTTCTTGCAAGGTTCGGTGGGTGGGACAAGCTTCGCCGGCCCGGGACATCCTCCAGGGGAAAGTTACACTGGGGTCACCACCTCGAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACCCAGCACCAAGTCTTGGGTTGAATAACATGGTAAATTTCCACGGGACGCCCATGACACAGCCTGCTGCATCATCTCATGGTGCATCAATCCATCAACTTCCAAATACCCCGTGGTGTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCCGAGGGGGTCCCTGATCTAGGTCTCGGTCAGATTTCGCAGCCTCTCAGTAGCCAACTTCACGGTGAGCTGGACCTGTCCCAACAAGGCAGGAGACATTATATGGATCTAGAACAGTCCAGGGCATATGAATCTGCTCATTGGTCACTTTAA 1080 0.4824 MASDAKLSSSESLNGLKFGQKIYFEDVGFATPATSLTSSATTATTVTSSSSSSSRKGRGGSVQPAQPPRCQVEGCEVDLSNAKTYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDHSGRGGNFLMELASYPKLSLRNSLPTPRSSELAPGNQTSTLSWHGNSETSSDLFLQGSVGGTSFAGPGHPPGESYTGVTTSSCALSLLSNQTWGSRNPAPSLGLNNMVNFHGTPMTQPAASSHGASIHQLPNTPWCFKGIDSGNCSPEGVPDLGLGQISQPLSSQLHGELDLSQQGRRHYMDLEQSRAYESAHWSL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1212 359 MobiDBLite consensus disorder prediction 37 60 - -
Gso3g1212 359 SUPERFAMILY SBT domain 68 149 IPR036893 GO:0003677|GO:0005634
Gso3g1212 359 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Gso3g1212 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 2 359 - -
Gso3g1212 359 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Gso3g1212 359 MobiDBLite consensus disorder prediction 37 69 - -
Gso3g1212 359 MobiDBLite consensus disorder prediction 187 211 - -
Gso3g1212 359 Pfam SBP domain 70 143 IPR004333 GO:0003677
Gso3g1212 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 359 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1212 Gso-Chr3 37762580 37767130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1212 16 359 SBP-box Gene Family AT2G42200 42.969 4.61e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso3g1212 SBP 4.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1212 - - gmx:100780949 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1212 3 37762580 37767130 Gso3g1212 3 37762580 37767130 ECH
Gso19g1213 19 40621840 40626715 Gso3g1212 3 37762580 37767130 GST