Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1205 ATGATGGCTTCTTCAAAGACCACCAACCCAATAACAACTACTACACAATTGGAACCACTCCCTCCACCTCAACACCGTCATCATCCTCATCATCTTCATCAGTTACAACAACAGCAACACCAACATCATTATCATCAACAAATTCATGACCATCAAATTTCTTTTGGACTGATGCAATCCTCTTCTTCATCTTCCTCTATCCCCGGAAACTACCTCGGAAGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCTGACCCTTCTAGTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCCTCTAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATAGAGCTAGTTTCTCCACAAACAAGTGGATCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCTAACCCCCGAAACGAAACTGCTTCTGCCCCTCAACCACCCAAACCTGTCAAGCGAGAGGGCAATCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCCTATGTTCAACAACTAGAGTCGAGTAGGATTAGGCTGAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGTGCACTCTTGGGTGGAGAGCAAGGACTTCCTGTCACTATGAATACCATTAGCACGGAGGCTGCAATGTTTGACGTAGAATATGCTAGATGGCAAGAGGAGAACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTTTTTGTTGACAATTGTTTGGCGCATTATGACCAAGTGATGAACCTCAAGAGCTTAGTGGCCAAAACAGATGTGTTCCATCTTGTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAGGCCATCTGAACTCATTAAGATTATTGTGAGTCAAATTGAGCCTCTCACCGAGCAACAAATATTGGGCATATGTGGATTGCAACAATCTACACAAGAAGCAGAAGAGGCTCTCTCCCAAGGACTCGAGGCTCTCAATCAATCTCTCTCGGACACTATAACATCAGATTCTCTTAGTTATCCTCCCAATATGGCTAACTATATGGGACAGATGGCTGTGGCCATGAACAAACTCTCCACTCTTGAAGGTTTCGTGAGACAGGCTGATAATCTGCGGCACCAAACCATTCACCGTCTTCACCAGATTCTAACAACGCGTCAAGCAGCAAGGTGTTTTTTGGCCATAGCTGAGTACTTTCATCGTCTTCGAGCCCTCAGTTCATTGTGGTTGGCACGCCCTCGCCAAGAATAG 1476 0.4654 MMASSKTTNPITTTTQLEPLPPPQHRHHPHHLHQLQQQQHQHHYHQQIHDHQISFGLMQSSSSSSSIPGNYLGSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNETASAPQPPKPVKREGNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARTQGMFLGGGALLGGEQGLPVTMNTISTEAAMFDVEYARWQEENHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQILTTRQAARCFLAIAEYFHRLRALSSLWLARPRQE* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1205 491 Pfam bZIP transcription factor 200 233 IPR004827 GO:0003700|GO:0006355
Gso3g1205 491 MobiDBLite consensus disorder prediction 1 20 - -
Gso3g1205 491 Pfam Seed dormancy control 291 366 IPR025422 GO:0006351|GO:0043565
Gso3g1205 491 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Gso3g1205 491 SUPERFAMILY Leucine zipper domain 200 242 IPR046347 GO:0003700|GO:0006355
Gso3g1205 491 SMART brlzneu 196 269 IPR004827 GO:0003700|GO:0006355
Gso3g1205 491 MobiDBLite consensus disorder prediction 176 203 - -
Gso3g1205 491 Coils Coil 219 246 - -
Gso3g1205 491 MobiDBLite consensus disorder prediction 98 117 - -
Gso3g1205 491 MobiDBLite consensus disorder prediction 1 32 - -
Gso3g1205 491 ProSiteProfiles DOG1 domain profile. 273 487 IPR025422 GO:0006351|GO:0043565
Gso3g1205 491 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 87 490 - -
Gso3g1205 491 MobiDBLite consensus disorder prediction 98 203 - -
Gso3g1205 491 MobiDBLite consensus disorder prediction 126 167 - -
Gso3g1205 491 PANTHER TRANSCRIPTION FACTOR TGA9 87 490 - -
Gso3g1205 491 Gene3D - 199 249 - -
Gso3g1205 491 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 242 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1205 Gso-Chr3 37689236 37696456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1205 69 491 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 66.216 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso3g1205 DOG1 7.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1205 3 37689236 37696456 Gso3g1205 3 37689236 37696456 ECH
Gso19g1206 19 40531168 40538533 Gso3g1205 3 37689236 37696456 GST