Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1198 ATGGATTCGAATTCGCGTTACCATGTTCAGCAGCAACACCAACAACCCAATTCTGGGTTACTTCGATTTCGCTCTGCCCCTACCGCGAATTTCAAACAACAAGGCGAAGTTGCTGCCAATACTAATGGGAACGCATGGGAGGGCTCTGAACCATTTTTGAGATTCTTGAATTCCGGGGACACCCACGATACGACGTCGTCGCCTACCTTACGAGAATTCGTGGATAATAAGGTTTCTAATAATAGTAAACCTGCGAAGGAGTCATCAGCATCATCACCTCTGAGTCGCATGAATTCCCAACAGGGGTATAGCGCTTCTATGTTACCCTCTCGGAGTACTGTAACTTCAGCTATGATGTTGGGTTCTATGGGAATCGATCAAAGTGCGAAAAGCTTTGATTCCAATTCTCTCAGGCAAAGTAGCTTCCCTGCTGGCCATTTCTCTAACAACATCTCCTTTCAGAACGGGTATGATGCTATGAAAGGTGTTGGAAACTATAGTGGGGTCAATGGCAATGATGGTGAACTTAGTCTATCTATGAACAGAATGAAGAATCACATTAGCTTCTCATCAATAAGTCCTTCTTCTTCCTTGGGAATGCTATCACCAACCTCCAAAATGGGCACGGAGGGTATTAGGGTAACTAGACCTGAGGATGGGAGACAGGGAAGTTGCAATGGTGATGCTCGATATTATGGTCCTGGATTCCCTTATGCTTCTTGGAATGAGCCCTCACACCCCAAAAGACAGCGAAGTAGTAATGATGAGTTACTTTTTGATTCTCAGAATGGAGAGCCAGGAAATCAAGTTCAAAGGCTTTCGCATCATTTGAGTTTGCCAAGAACGTCGTCGGAGATGTTTGCTATGGATAATTTGCTTCAGTTCTCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACAAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAACCATGGACAAGCAAACTAGCACAGCAGAGATGTTGGACTTGGCTTTAGACTACATAAAAGATCTTCAGAAACAATTCAAGACTCTGAGCGATAAACGGGCTAAATGCAAATGTATAAACATGCAGAAGTCAGAAGCAGATCGAGTTGCTTGA 1164 0.4381 MDSNSRYHVQQQHQQPNSGLLRFRSAPTANFKQQGEVAANTNGNAWEGSEPFLRFLNSGDTHDTTSSPTLREFVDNKVSNNSKPAKESSASSPLSRMNSQQGYSASMLPSRSTVTSAMMLGSMGIDQSAKSFDSNSLRQSSFPAGHFSNNISFQNGYDAMKGVGNYSGVNGNDGELSLSMNRMKNHISFSSISPSSSLGMLSPTSKMGTEGIRVTRPEDGRQGSCNGDARYYGPGFPYASWNEPSHPKRQRSSNDELLFDSQNGEPGNQVQRLSHHLSLPRTSSEMFAMDNLLQFSDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPTMDKQTSTAEMLDLALDYIKDLQKQFKTLSDKRAKCKCINMQKSEADRVA* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1198 387 Gene3D - 311 383 IPR036638 GO:0046983
Gso3g1198 387 Pfam Helix-loop-helix DNA-binding domain 315 360 IPR011598 GO:0046983
Gso3g1198 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 359 IPR011598 GO:0046983
Gso3g1198 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 376 IPR036638 GO:0046983
Gso3g1198 387 SMART finulus 315 365 IPR011598 GO:0046983
Gso3g1198 387 MobiDBLite consensus disorder prediction 1 47 - -
Gso3g1198 387 PANTHER TRANSCRIPTION FACTOR BHLH130 12 379 - -
Gso3g1198 387 MobiDBLite consensus disorder prediction 256 271 - -
Gso3g1198 387 MobiDBLite consensus disorder prediction 58 108 - -
Gso3g1198 387 MobiDBLite consensus disorder prediction 1 108 - -
Gso3g1198 387 MobiDBLite consensus disorder prediction 238 271 - -
Gso3g1198 387 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 12 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1198 Gso-Chr3 37652011 37655674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1198 1 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 40.201 4.35e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g1198 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1198 - - gmx:100814652 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1198 3 37652011 37655674 Gso3g1198 3 37652011 37655674 ECH
Gso3g1198 3 37652011 37655674 Gso11g1117 11 10025398 10030320 ECH
Gso19g1197 19 40472880 40476573 Gso3g1198 3 37652011 37655674 GST