Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1197 ATGCCAATGCATCACCATCTTCTTCTTCTTCCCCTTCTCTTCTCTCTTGTTTCTCCGATGACCTCCCTCAACTCCGACGGCCTCTCCCTGTTAGCTCTCAAAGCGGCTGTGGACGCCGACCCCACCGGAGTTCTTACTTCCTGGTCGGAAACCGATGTCACCCCATGTCATTGGCCGGGAATCTCCTGCACCGGCGACAAAGTAACCCAACTCTCCCTCCCAAGAAAAAACCTCACCGGTTACATCCCTTCCGAGTTAGGCTTCTTAACCTCCCTCAAAAGACTAAGCCTTCCGTACAACAACTTTTCAAACGCGATTCCACCATCTCTATTCAACGCCAGGTCACTCATCGTTCTCGACCTCTCTCATAACTCTCTCTCCGGTTCCCTCCCTAACCAGCTTCGCTCTCTCAAGTTCCTTCGCCATTTGGACTTATCCGATAACTCCCTCAACGGCTCCCTCCCTGAAACACTCTCCGATCTCACCTCCCTCGCCGGAACCCTCAATCTTTCCTTCAACCACTTCTCCGGCGGGATTCCGGCGACTCTAGGAAACCTTCCGGTCGCCGTCAGCCTCGACCTACGCAACAATAATCTCACCGGGAAAATCCCGCAAATGGGGACCCTTTTGAACCAGGGTCCCACCGCGTTTTCTGGTAACCCTGGACTGTGCGGTTTCCCATTGCAGAGTGCTTGCCCTGAAGCGCAAAAGCCTGGGATTTTCGCTAACCCTGAAGATGGTTTCCCTCAGAACCCCAATGCGCTTCACCCGGATGGAAATTATGAGAGAGTGAAGCAGCACGGTGGTGGGTCCGTTGCTGTTCTTGTTATCTCCGGGCTCTCCGTCGCGGTTGGCGCGGTTTCGCTGTCGTTGTGGGTTTTCCGGCGAAGATGGGGGGGTGAGGAAGGGAAATTGGTGGGTCCAAAATTGGAGGATAACGTGGATGCGGGAGAGGGGCAAGAGGGTAAATTTGCTGTGGTGGATGAAGGGTTTGAGTTAGAGTTGGAGGATTTGCTGAGGGCTTCTGCGTATGTTGTTGGGAAGAGCAGGAGTGGGATTGTGTATAAGGTTGTCGGTGTCGGAAAAGGGTTGTCCTCCGCGGCGGCGAATGTGGTGGCTGTTCGAAGGCTGAGCGAGGGTGATGCCACGTGGCGGTTCAAGGAGTTTGAGTCTGAGGTTGAGGCCATTGCCAGGGTTCGTCACCCCAATGTCGTTCCTTTGAGAGCTTATTACTTTGCGCGTGATGAGAAGCTGATTATCACTGATTTCATTCGCAATGGAAGCTTGCACACAGCCTTACATGGTAATGGTGGGCCTTCCAATTCATTGCCACCATTATCATGGGCAGTAAGGTTAAAAATTGCTCAAGAAGCGGCAAGAGGCTTGATGTATATACACGAGTTCAGTGGTCGCAAATATATCCATGGCAACATAAAGTCAACTAAAATCTTGCTGGATGATGAGCTCCATCCATACGTATCAGGTTTTGGACTTACTCGGCTGGGTTTGGGCCCGACAAAGTCTGCCACAATGGCACCAAAACGAAACAGCTTGAACCAATCTTCTATAACCACTGCAATGAGTTCAAAGGTTGCAGCTTCCTTGAACCACTACTTGGCACCCGAGGTGCGCAATACTGGTGGCAAATTCACTCAGAAATGTGATGTATATTCTTTTGGTATAGTGCTGTTAGAACTTTTGACAGGTAGAATGCCAGATTTTGGAGCAGAAAATGATCATAAGGTACTAGAGAGTTTTGTAAGGAAAGCATTCAAGGAGGAGAAGCCATTATCTGATATCATAGATCCAGCACTTATCCCTGAAGTTTATGCTAAAAAGCAAGTCATTGTTGCATTCCATATTGCTCTAAACTGCACTGAACTTGATCCAGAGTTGCGACCTAGAATGAAAACCGTGTCAGAGAACCTTGATCACATCAAAATACAGTGA 1950 0.4974 MPMHHHLLLLPLLFSLVSPMTSLNSDGLSLLALKAAVDADPTGVLTSWSETDVTPCHWPGISCTGDKVTQLSLPRKNLTGYIPSELGFLTSLKRLSLPYNNFSNAIPPSLFNARSLIVLDLSHNSLSGSLPNQLRSLKFLRHLDLSDNSLNGSLPETLSDLTSLAGTLNLSFNHFSGGIPATLGNLPVAVSLDLRNNNLTGKIPQMGTLLNQGPTAFSGNPGLCGFPLQSACPEAQKPGIFANPEDGFPQNPNALHPDGNYERVKQHGGGSVAVLVISGLSVAVGAVSLSLWVFRRRWGGEEGKLVGPKLEDNVDAGEGQEGKFAVVDEGFELELEDLLRASAYVVGKSRSGIVYKVVGVGKGLSSAAANVVAVRRLSEGDATWRFKEFESEVEAIARVRHPNVVPLRAYYFARDEKLIITDFIRNGSLHTALHGNGGPSNSLPPLSWAVRLKIAQEAARGLMYIHEFSGRKYIHGNIKSTKILLDDELHPYVSGFGLTRLGLGPTKSATMAPKRNSLNQSSITTAMSSKVAASLNHYLAPEVRNTGGKFTQKCDVYSFGIVLLELLTGRMPDFGAENDHKVLESFVRKAFKEEKPLSDIIDPALIPEVYAKKQVIVAFHIALNCTELDPELRPRMKTVSENLDHIKIQ* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1197 649 ProSiteProfiles Protein kinase domain profile. 340 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1197 649 Gene3D Ribonuclease Inhibitor 167 234 IPR032675 -
Gso3g1197 649 SUPERFAMILY L domain-like 27 229 - -
Gso3g1197 649 PRINTS Leucine-rich repeat signature 116 129 - -
Gso3g1197 649 PRINTS Leucine-rich repeat signature 137 150 - -
Gso3g1197 649 Gene3D Transferase(Phosphotransferase) domain 1 424 649 - -
Gso3g1197 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 649 - -
Gso3g1197 649 Pfam Protein tyrosine and serine/threonine kinase 346 643 IPR001245 GO:0004672|GO:0006468
Gso3g1197 649 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Gso3g1197 649 Gene3D Ribonuclease Inhibitor 22 166 IPR032675 -
Gso3g1197 649 SUPERFAMILY Protein kinase-like (PK-like) 345 643 IPR011009 -
Gso3g1197 649 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Gso3g1197 649 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 5 649 - -
Gso3g1197 649 Gene3D Phosphorylase Kinase; domain 1 324 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1197 Gso-Chr3 37636099 37639894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1197 23 647 Receptor kinase-like Gene Family AT3G57830 59.438 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso3g1197 PK_Tyr_Ser-Thr 3.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1197 - - gmx:100778816 1235.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1197 3 37636099 37639894 Gso3g1197 3 37636099 37639894 ECH
Gso19g1196 19 40459437 40463223 Gso3g1197 3 37636099 37639894 GST