Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1196 ATGGACCAAGCTCCGGGAGGATTGCGCGGATCCGTGCATGACGGCGCTACGCTCGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGTGCCGGCGCCGGAAAACGCTAACTCGTTCACCGCGCTGCTTGAACTCCCGCCGACGCAGGCGGTGGAGCTCCTTCACTCGCCGGAATCCGACAGCGCTCGGAAACCGCCTAATTGCCACGTCAGCGCGAACCAGAAACCCTACCTGCCCAACTCTTTCGGCAGCAATTTAACCTTCCCTTCCAACGCCGCCTTAATCGAACGCGCCGCGAAGTTCTCTGTGTTCGCCGGCGAGAACTCGCCGCTTCCGCCGGAGGAGGCGTGCCTGGTTCCGGCCGGGACCGGTTCCGTTTCGAATTTGGATAGAGTGAAGAACGAGCCACAGGAGACCGATTCGAACCCGTGCTCGAGCTCGAGGCTGGGTTGCATTTCGGATCCCGCGGTGGAGAACAACAATCAGAGGACCGCCAAGAGAAAGGAGCGAGAGAAGAAGCTAACAGTTAAAGGATCGTCGAAGAAGAGTAAAAGCATCGCCGATGAGACCTCCGGTGACGGCGAGAAGCTTCCTTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAACGCTCGCATGAAGCTTTTGCAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGGACGGCAATGGTTCTGGATGAAATCATCAACCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCTAGAATTGATTTCAGCCTCGACAGTTTATTGGCTACTGATGGGGCATCTCTAATGGATAATAACTTACCTAGCATGGTGACACCTCTCATGTGGCCAGAAATCCCACTCAATGGCAACCGGCAGCATTATCAACAGCAGTGGCAATTGGATGCATTCCACCAACCTCTCTGGGAGAGGGAAGAAGTCAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCAAACTCAGCGGCAGTGCAGCCGGTTTATATTGTTGTCTTACCCTCGGATCCCCTCAGTTCTACTATGAGACATTGCTTTCTTCGTTGGACTAAAGAGTATGGTGATCAAACTCTCGAGTTAACTCGTTAA 1203 0.5262 MDQAPGGLRGSVHDGATLESIQFNEEIQGIMAPVPAPENANSFTALLELPPTQAVELLHSPESDSARKPPNCHVSANQKPYLPNSFGSNLTFPSNAALIERAAKFSVFAGENSPLPPEEACLVPAGTGSVSNLDRVKNEPQETDSNPCSSSRLGCISDPAVENNNQRTAKRKEREKKLTVKGSSKKSKSIADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDNNLPSMVTPLMWPEIPLNGNRQHYQQQWQLDAFHQPLWEREEVNHNFMTPENSLLSYDSSANSAAVQPVYIVVLPSDPLSSTMRHCFLRWTKEYGDQTLELTR* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1196 400 Coils Coil 252 272 - -
Gso3g1196 400 SMART finulus 218 268 IPR011598 GO:0046983
Gso3g1196 400 Gene3D - 209 281 IPR036638 GO:0046983
Gso3g1196 400 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 363 - -
Gso3g1196 400 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Gso3g1196 400 MobiDBLite consensus disorder prediction 132 164 - -
Gso3g1196 400 CDD bHLH_AtBPE_like 202 287 - -
Gso3g1196 400 MobiDBLite consensus disorder prediction 165 198 - -
Gso3g1196 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
Gso3g1196 400 MobiDBLite consensus disorder prediction 132 198 - -
Gso3g1196 400 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 363 IPR024097 GO:0006355
Gso3g1196 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1196 Gso-Chr3 37599588 37608091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1196 6 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.977 1.20e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso3g1196 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1196 - - gmx:100814124 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1196 3 37599588 37608091 Gso3g1196 3 37599588 37608091 ECH
Gso19g1194 19 40426946 40435958 Gso3g1196 3 37599588 37608091 GST