Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1194 ATGTTTCCAAACAATTATGATATTTCATCTGTTCAGCCTATTGTTGCTGCTTCTGAAGGAACCACAGTTTTTGGTGATCAGAGGAATGTTAGGGAAGAGCCCCGTACATATCTGGGAGTACAAAAGGTCACGGATAAACCAATCTATATAGGTCTAGTACGTGAGAATGATGCAACCAAGAGCGAGCGAACAATATATCTTGGTAAATTTGACAAGGAGGTAAATGCAGCAAGAGCTCATGACTTGGTGGCTCTGAAACGCGGGGGATCCAGTGCAAAAACAAATTTTCCAGAAAGTCACTACAAGACAGCATTGGAGGCTATGACGACTGATATGACACAAACGGATGTTGTGGATTCTGTCAGAATGTTAAGTTACAGCTTTGTGAAGTTCATATCCAAGTATCGTGGAGTCATCAGAGATTCATCTACTGCGAAATGGGAAGCAATTTTTGTTACAAGCAGCGACGACAACAAATCCCTTGGATTATTCGACACAGAAGAGGAAGCAGCAAGGGCATATGATGTTGAAAGCATAAGGTTGAAAGGGTACGACGCCATTACCAACTTCAATATCAGGTTTTACAACGTTGAGGCCATTTTGAAAGGAGTAACTGATCCTGAAAAAGTAATATATCAGTCACAAGACACTGTCCCTGTGGAAGCAATGCAGCCTTTGGAAGTGCTTCAGAACATTATTGACCAAGGCTCCTCGAAAATGTTGTATGGTACTACTACTGATACCTTCGGAAGCAATGTATTTCAAAGGCCAATATCAGGAAACACAGAAGAACAGGAAAATTATGTGGCCTTTGCCTCACAAGGCCGTGAAAATGACCCTAATAGAAATTTGTCCTTAGTGACTGAGGGGCAACCTTTGGTCTATGGAAGAAGTGGTGAGGACGATGGTCAGGGAGGCTCATCAGCCAGCAGCATGTGTTTTGAGGATGAACTGACCAATGCTTATAAAAAATTCATAAAGAGGAGTTAA 990 0.4192 MFPNNYDISSVQPIVAASEGTTVFGDQRNVREEPRTYLGVQKVTDKPIYIGLVRENDATKSERTIYLGKFDKEVNAARAHDLVALKRGGSSAKTNFPESHYKTALEAMTTDMTQTDVVDSVRMLSYSFVKFISKYRGVIRDSSTAKWEAIFVTSSDDNKSLGLFDTEEEAARAYDVESIRLKGYDAITNFNIRFYNVEAILKGVTDPEKVIYQSQDTVPVEAMQPLEVLQNIIDQGSSKMLYGTTTDTFGSNVFQRPISGNTEEQENYVAFASQGRENDPNRNLSLVTEGQPLVYGRSGEDDGQGGSSASSMCFEDELTNAYKKFIKRS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1194 329 MobiDBLite consensus disorder prediction 292 311 - -
Gso3g1194 329 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 54 204 - -
Gso3g1194 329 ProSiteProfiles AP2/ERF domain profile. 36 97 IPR001471 GO:0003700|GO:0006355
Gso3g1194 329 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL7 54 204 - -
Gso3g1194 329 SUPERFAMILY DNA-binding domain 58 99 IPR016177 GO:0003677
Gso3g1194 329 Gene3D AP2/ERF domain 36 98 IPR036955 GO:0003700|GO:0006355
Gso3g1194 329 Gene3D AP2/ERF domain 133 193 IPR036955 GO:0003700|GO:0006355
Gso3g1194 329 SUPERFAMILY DNA-binding domain 133 193 IPR016177 GO:0003677
Gso3g1194 329 Pfam AP2 domain 133 176 IPR001471 GO:0003700|GO:0006355
Gso3g1194 329 SMART rav1_2 48 103 IPR001471 GO:0003700|GO:0006355
Gso3g1194 329 SMART rav1_2 134 197 IPR001471 GO:0003700|GO:0006355
Gso3g1194 329 CDD AP2 133 192 IPR001471 GO:0003700|GO:0006355
Gso3g1194 329 ProSiteProfiles AP2/ERF domain profile. 134 191 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1194 Gso-Chr3 37565524 37570537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1194 53 207 AP2-EREBP Transcription Factor Family AT1G51190 43.590 3.84e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g1194 AP2 2.8e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1194 - K09285 gmx:102664631 633.639