Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1190 ATGGCTGACCCCTACTCCAATTTCTTCTCTTCCTCTTCACCCTTGTTCCGTTTCAACCACAACCAATATTTCCCTTCTTCAAACCCTTCTCCACAACACCACAACCACAACTTCATCAACCACACAAAAACCAACGACACCACCACCACCACCGCCTTTTTCCACTACCACCAACACCAAACTACTACTGCTTTTTCTTCTTTTCCACCCTCACCTCCTTTGAGAGAAGAACTACCCCTCTTGAAGCTGAGTCCAACAAAGCAAGATGAGGAGGAAGTAGAGGACTTGGTGTCTAATTGCACTGGTGGAGCCATGGACGTGGAAGAGAGGATCCACCTTAAAGAGGAATTAGAAGATGATGAAGATGGAAGTACTAGTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCTGTCCTCTCTTCTTCCTCTCATGAGATCACTGACAAAGACCAACATGGAGATCATGGTGCTGCTGAGGATTCTTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACCCCTTCCCAGATTCTCATTGGCCCTACCCAGTTCTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGAACCCAACCAACAGGAATGTTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGAAACAACATTGACCACCCAAGAGCGAAGCCTCTCAAAGACTTTAGAACACTCCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGGAAATGTGGCAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTTTGGTACTGTATTTGTGGCTCCGATTTCAAGCACAAGAGGTCCCTTAAAGACCATATTAAAGCATTCGGGAGTGGCCATGCAGCTTATGGCATCGATGGATTCGAAGAAGAAGATGAGCCTGCATCTGAAGTAGAGCAAGATAATGATGATTCCACCCAGTGA 1077 0.4763 MADPYSNFFSSSSPLFRFNHNQYFPSSNPSPQHHNHNFINHTKTNDTTTTTAFFHYHQHQTTTAFSSFPPSPPLREELPLLKLSPTKQDEEEVEDLVSNCTGGAMDVEERIHLKEELEDDEDGSTSVTVALHIGLPSPSAAEMASVLSSSSHEITDKDQHGDHGAAEDSSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1190 358 SMART c2h2final6 196 218 IPR013087 -
Gso3g1190 358 SMART c2h2final6 280 300 IPR013087 -
Gso3g1190 358 SUPERFAMILY beta-beta-alpha zinc fingers 262 300 IPR036236 -
Gso3g1190 358 Gene3D Classic Zinc Finger 195 218 - -
Gso3g1190 358 Gene3D Classic Zinc Finger 258 332 - -
Gso3g1190 358 MobiDBLite consensus disorder prediction 146 171 - -
Gso3g1190 358 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Gso3g1190 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 300 IPR013087 -
Gso3g1190 358 PANTHER ZINC FINGER PROTEIN WIP2 1 357 IPR043584 GO:0003700|GO:0010468
Gso3g1190 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Gso3g1190 358 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1190 Gso-Chr3 37472012 37475110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1190 1 354 C2H2 Transcription Factor Family AT3G57670 62.791 1.74e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1190 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1190 - - gmx:100813583 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1190 3 37472012 37475110 Gso3g1190 3 37472012 37475110 ECH
Gso19g1187 19 40296414 40299382 Gso3g1190 3 37472012 37475110 GST
Gso3g1190 3 37472012 37475110 Gso2g1542 2 32749561 32752342 PCT
Gso2g1542 2 32749561 32752342 Gso3g1190 3 37472012 37475110 PCT