Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1183 ATGGCAACGGGAACGGGAAGTAAGAAGAAGGCATCGCCTCTCTCTTTGGAGCAATTCATCTCCATTACCGCTCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATTTCAAGCTCGATCGCCACTGGTGCGTCCAGGAATTTGGATACTGCTCAAAAGAGGGGTTCTACAATCCTCAACTTGAAGTGCGTCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCAACAAAAGGAGATGTTCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGGTTAAAGGACTCATCAATAACCATTGCTTTTGATGATATACCGGAAGACGGTTTAAACAGTCCCCTAAGACTGGAAAAAGTAGCAAATGAGGTGACTTATCGCAGGATGAAAGACGCGTTGATACAGTTGAGTAAAGGAGTGCACAAGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAACAGTGTCCAAGAAGGATGTATCTTCCACTCCCTTTAATAAAAATCTTGATCACTCCCAGAAAGAAGCAGTTTCAAAAGCTCTATCATCGAAGAATGTGTTCTTGTTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTGGACAACATTGTTGAGCGGCTAGTTCCACATAGAGTTAAGCTGGTGAGAGTGGGTCATCCTGCACGTTTATTGCCTCAAGTATTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAAAGACAGAAATACTAGAAAGGACATACAAAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAAAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTATACTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCCGAGAAGAAAGGCTTAGGAAGAACGCTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAATCACATCAATGCTTACAATCCAGTATCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCAAGTGTTACTGCGCATATGTTATATGATCTTGAGGGTGTGAAGCGGACAAATTCTACTGAACCAACCCTCCTTCTCATAGACACAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAGGTTACCGTGACTCACGCAAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACTCCGTATGCTGCACAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGGACCGGCTGAAGGATGTTGAAATCTCAACAGTTGATGGATTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCTGTGACACGGTCCAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGACGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATCTAAGTGCATCTGAGTACCAGAATGAGTAG 1947 0.4278 MATGTGSKKKASPLSLEQFISITAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITIAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERPPTVSKKDVSSTPFNKNLDHSQKEAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPILKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEITSMLTIQYRMHELIMDWSSKELYNSKIKAHPSVTAHMLYDLEGVKRTNSTEPTLLLIDTAGCDMEEKKDEEDSTFNEGEAEVTVTHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1183 648 PANTHER HELICASE WITH ZINC FINGER 2 12 646 - -
Gso3g1183 648 Gene3D - 42 144 - -
Gso3g1183 648 Coils Coil 299 319 - -
Gso3g1183 648 TIGRFAM TIGR00376: putative DNA helicase 345 641 IPR004483 GO:0003677|GO:0005524
Gso3g1183 648 SMART ultradead3 194 445 IPR014001 -
Gso3g1183 648 Pfam AAA domain 198 412 IPR041677 GO:0004386
Gso3g1183 648 CDD DEXXQc_SMUBP2 197 445 - -
Gso3g1183 648 SMART AAA_5 212 430 IPR003593 -
Gso3g1183 648 CDD SF1_C_Upf1 446 634 IPR041679 -
Gso3g1183 648 Pfam AAA domain 421 617 IPR041679 -
Gso3g1183 648 Gene3D - 25 428 IPR027417 -
Gso3g1183 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 634 IPR027417 -
Gso3g1183 648 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 12 646 - -
Gso3g1183 648 Gene3D - 444 648 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1183 Gso-Chr3 37392179 37398952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1183 196 381 Core DNA Replication Machinery Family AT1G08840 27.419 3.98e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1183 K19036 - gmx:100810545 1239.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1183 3 37392179 37398952 Gso3g1183 3 37392179 37398952 ECH
Gso19g1184 19 40252003 40260342 Gso3g1183 3 37392179 37398952 GST