Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1182 ATGGATACTTGCAAGAAGTTCCCCTTGAAGCCATGGAAGAAAGGGCCAACAAGGGGGAAAGGCGGCCCCCAGAACGCCTCGTGTGAGTACCGAGGCGTTCGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACTAGGCTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGTCCAGATGCATACCTTAATCTCCCCCACCTTCAACCAAGGTCCACTTCAACTACTATCACATCATCAGGGAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCAATGTTCCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCACCAGAGGCTACAGGAGCTTAAGAGAAATTCAGTTGTCAGTCAATCGCCGCCTAATTCATCCAATGAACCAAAGGAAGAAACTCAGACTGTAGGCAGCAAAAAAGATGGAGAAAATCCACCAAAAGATGATCAAATGTTGTCAGAGGAGGTTCTTGGAGATCTTCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGATGGGAATCCTTAAAGAAGAAAGAGAGTCAGAGAGAACTGATAGCTCAGGAAGTTCATCAACAATGCCTGAAGCTCTGTTGAGAGATGACAATGATCATCATTTGGGAGTGTTTTCTGACAATAGTGTTAACTGGGAGGCATTGATTGATATGCATGGAATTGCAGGTATTCAGGAATCAGAAGTCACTCAGCTTGAAGCATATGACCCAAATGATGATCTTACTTTCTCAACTTCCATTTGGAACTTTTAA 855 0.4433 MDTCKKFPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSTTITSSGKFKWFPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKRNSVVSQSPPNSSNEPKEETQTVGSKKDGENPPKDDQMLSEEVLGDLQEKPQIDLHEFLQQMGILKEERESERTDSSGSSSTMPEALLRDDNDHHLGVFSDNSVNWEALIDMHGIAGIQESEVTQLEAYDPNDDLTFSTSIWNF* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1182 284 MobiDBLite consensus disorder prediction 142 159 - -
Gso3g1182 284 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Gso3g1182 284 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Gso3g1182 284 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Gso3g1182 284 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Gso3g1182 284 MobiDBLite consensus disorder prediction 142 177 - -
Gso3g1182 284 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Gso3g1182 284 MobiDBLite consensus disorder prediction 206 227 - -
Gso3g1182 284 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Gso3g1182 284 MobiDBLite consensus disorder prediction 160 177 - -
Gso3g1182 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 281 - -
Gso3g1182 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 281 - -
Gso3g1182 284 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Gso3g1182 284 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1182 Gso-Chr3 37387572 37391098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1182 9 284 AP2-EREBP Transcription Factor Family AT3G57600 53.430 8.06e-90 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g1182 AP2 1.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1182 3 37387572 37391098 Gso3g1182 3 37387572 37391098 ECH
Gso19g1183 19 40250849 40252272 Gso3g1182 3 37387572 37391098 GST
Gso3g1182 3 37387572 37391098 Gso2g1546 2 32902733 32903949 PCT
Gso2g1546 2 32902733 32903949 Gso3g1182 3 37387572 37391098 PCT