Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1181 ATGAATCACTTATCTCTTGACACCGAAGATTATTCTCTGTCAAGCTTGCTGGAGCTTGCAGCCAACAACGATGTTTCGGGTTTCAAAAGACTAATCGAGTGCGATCCTTCCTCCATAGACGAGGTTGGGTTGTGGTATATCCGTCACAAAGAGTCAAAGAAGATGGTCAATGAGCAAAGAACTCCTTTGATGGTTGCTGCTACCTATGGCAGCATTGATGTCATGAAGCTGATTCTTTCTCTATCAGAAGCCGATGTGAACCTCTCTTGTGGCCTTGACAAAAGCACTGCACTTCACTGCGCAGCTTCAGGTGGGTCTGAAAATGCCGTTGATGCTGTGAAACTGCTTCTGGAAGCAGGTGCTGATGTGAATTCCGTTGATGTCAATGCTCACCGACCCGGTGATGTTATTGTTTTCCCTACAAAGCTTGAACATGTGAAAAAAACCAGTCTTGAAGAGCTTCTTCAAAAAACCGATGATTGGAGTCTCCTTAGGGTGATCACAACAACAACCTCATGCAATGCTTGTTCACCTCCTTTATCGACCTCACCCGAGATTGAGATTGAGATTGAGATCGAGTCTCCTTGTTCTGCCCGAGATTCGAAGATGAAGTCAGATGAAGTCACTGAAAAGAAAGAGTACCCAGTTGCTCCGTCCCTTCCGGACATCAAGAACAGCATATACTCAACCGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCTTGTTCGCGCGCTTATTCGCACGATTGGACTGAATGCCCCTTTGTTCATCCAGGGGAGAATGCCAGAAGAAGGGACCCGAGAAAGTTTCATTATAGCTGTGTCCCTTGTCCTGAATTTCGAAAGGGTTCTTGCAGGAGAGGGGATTTGTGTGAGTATGCTCATGGGGTTTTTGAATGCTGGTTGCATCCTGCACAATATCGAACCAGGCTTTGCAAGGATGGGACTAATTGTGCAAGAAGAGTTTGCTTCTTTGCCCACACCAATGAAGAGCTTAGACCTCTGTATGTTTCTACTGGCTCTGCTGTTCCTTCTCCTCGTTCGGGCGCGCCTTCTTCTGCTATGGATTTTGTTACAGCCATGACCATGTCGCCTTCCAGTCCTTCAATTGCTTGGTCTCAGCCTAACATCCCAGCATTGCATCTTCCTGGAAGTAATTTTCATTCCAGTAGATTGAGATCTTCACTCAATGCTAGAGATATTTCTATGGATGATTTTGATTTGTTATTACCTGATTATGATCAGCATCAGCAGCAGCAACAGTTCCTTAATGAGTTATCATGCCTCTCTCCACATGCTATGAATTCTAATCCCATGAACCGCTCTGGTCGAATGAAACTCTTGACTCCTTCAAATCTTGATGATCTGTTTTCAGCTGAGAGTTCTTCTCCTAGATATGCTGATCCAGCATTGGCTTCAGCTGTGTTTTCTCCAACTCACAAATCAGCTGTCTTCAATCAATTTCAGCAGCACCAGCAAAGCTTGTTGGCACCGGTGAATACTAATTTTGCTTCTAAAAATGTTGAGCATCCTTTGTTGCAGGCCTCATTGGTAATGTCTCCCCGAAATGTGGAACCTATTTCTCCAATGGGATCTAGGATTTCTATGCTAGCGCAACGTGAGAAGCAACAATTTTGCAGCTTAAGCTTCCGGGAACTCGGCTCCAATTCTGCTGCTTCTGCTGCCTCTACTACCTCTGCCAATTCTTGGTCAAAATGGGGGTCACCTAATGGTAATTTTGATTGGCCAGTTGGTGCTTCTGATGAAATAGGTAAGCTAAGAAGGTCATCATCATTTGAGCTTGGGAACAATGGTGAGGAGCCTGATTTATCTTGGGTGCAGTCACTTGTTAAGGAATCACCGGCTGACGTTAAAGGTAAATTTGCAACCACTGTCTCAAATGTTTCAGCAGCAGCAGCTGGATCCTCCAGTGAGGGATCAAACATGAGCACACAAATGGAGTCTGTTGTTGATCATGCTATGCTGGGAGCATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTAA 2043 0.4498 MNHLSLDTEDYSLSSLLELAANNDVSGFKRLIECDPSSIDEVGLWYIRHKESKKMVNEQRTPLMVAATYGSIDVMKLILSLSEADVNLSCGLDKSTALHCAASGGSENAVDAVKLLLEAGADVNSVDVNAHRPGDVIVFPTKLEHVKKTSLEELLQKTDDWSLLRVITTTTSCNACSPPLSTSPEIEIEIEIESPCSARDSKMKSDEVTEKKEYPVAPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGSCRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTNCARRVCFFAHTNEELRPLYVSTGSAVPSPRSGAPSSAMDFVTAMTMSPSSPSIAWSQPNIPALHLPGSNFHSSRLRSSLNARDISMDDFDLLLPDYDQHQQQQQFLNELSCLSPHAMNSNPMNRSGRMKLLTPSNLDDLFSAESSSPRYADPALASAVFSPTHKSAVFNQFQQHQQSLLAPVNTNFASKNVEHPLLQASLVMSPRNVEPISPMGSRISMLAQREKQQFCSLSFRELGSNSAASAASTTSANSWSKWGSPNGNFDWPVGASDEIGKLRRSSSFELGNNGEEPDLSWVQSLVKESPADVKGKFATTVSNVSAAAAGSSSEGSNMSTQMESVVDHAMLGAWLEQMQLDHLVAQQN* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1181 680 PRINTS Ankyrin repeat signature 59 74 IPR002110 GO:0005515
Gso3g1181 680 PRINTS Ankyrin repeat signature 112 126 IPR002110 GO:0005515
Gso3g1181 680 SMART ANK_2a 11 41 IPR002110 GO:0005515
Gso3g1181 680 SMART ANK_2a 93 125 IPR002110 GO:0005515
Gso3g1181 680 SMART ANK_2a 58 88 IPR002110 GO:0005515
Gso3g1181 680 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Gso3g1181 680 SUPERFAMILY Ankyrin repeat 14 138 IPR036770 -
Gso3g1181 680 Gene3D - 272 335 - -
Gso3g1181 680 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 370 - -
Gso3g1181 680 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 367 677 - -
Gso3g1181 680 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Gso3g1181 680 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Gso3g1181 680 Pfam Ankyrin repeats (3 copies) 19 127 IPR002110 GO:0005515
Gso3g1181 680 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Gso3g1181 680 Gene3D - 10 159 IPR036770 -
Gso3g1181 680 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Gso3g1181 680 PANTHER UNKEMPT FAMILY MEMBER 1 370 IPR045234 -
Gso3g1181 680 PANTHER UNKEMPT FAMILY MEMBER 367 677 IPR045234 -
Gso3g1181 680 Pfam CCCH-type zinc finger 277 297 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1181 Gso-Chr3 37377396 37380363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1181 10 673 C2H2 Transcription Factor Family AT5G12850 50.285 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso3g1181 Ank_2 4.2e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1181 - - gmx:100810012 1258.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1181 3 37377396 37380363 Gso3g1181 3 37377396 37380363 ECH