Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1177 ATGGGAAACTGCTGCGCCACGCCGTCCACGGACGAAACGGCGAACAAGAAGGGCAAAAAGGGAAAAAAGGAAAACCCCTTCGCGATCGACTACGGTTTCAACGCCACCGCCGCGAACGGGTCGAAGCTCACCGTTTTGAAGTCCCCGACGGGCCGCGAGATCGAGGCCCGCTACGAGCTGGGCCGTGAGCTGGGCCGGGGCGAGTTCGGCATAACCTACCTCTGTACGGACAAGGGGACCGGAGAGGAGCTGGCGTGCAAGTCGATCTCGAAGAAGAAGCTTCGGACGGCGATCGACATCGAGGACGTGAGGAGGGAGGTGGAGATCATGCGCCACTTGCCGCAGCATGCGAACATCGTGACCTTGAAGGACACCTACGAGGATGACAATGCCGTTCATCTTGTTATGGAGCTTTGTGAGGGCGGGGAGCTCTTCGACCGCATCGTGGCGCGAGGCCACTACACCGAACGCGCCGCCGCCGCCGTCACCAAGACCATCGTCGAAGTCGTTCAGATGTGCCACAAGCAAGGTGTGATGCATCGGGATCTCAAGCCAGAAAACTTTTTGTTTGCAAATAAAAAGGAAACTGCGGCTTTGAAGGCTATAGATTTTGGGTTGTCGGTGTTCTTTAAACCAGGGGAAAAATTTAATGAGATTGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTGAAGCGAAATTATGGGCCAGAAGTGGATATCTGGAGTGCTGGAGTAATTCTATACATCTTACTTTGTGGTGTTCCACCTTTCTGGGCAGAAACTGAGCAAGGAGTTGCACAAGCAATCATACGATCTGTTGTTGATTTCAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCAAAAGACCTAGTGAAGAAGATGCTAGATCCTGACCCGAAGCGGCGGCTTACTGCACAGGACGTTTTAGATCATCCATGGTTACAAAACGCAAAGAAGGCTCCTAATGTTTCCTTAGGAGAAACTGTTAGAGCAAGGCTCAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTAAGGGTGATTGCTGAGCATTTGACGGTAGAAGAAGCTGCCGGGCTAAAAGAGGGATTCCAGGTTATGGATACAAACAACAGAGGCAAGATTAACATTGATGAATTACGAGTAGGGTTGCATAAACTTGGTCATCAAGTTCCCGAATCAGATGTCCAAGCTCTTATGGATGCTGGTGATGTAGACGGGGATGGGCACCTAGATTATGGAGAGTTTGTAGCCATTTCTGTTCATCTGAGAAAGATGGGAAATGATGAGCATCTTCGCAAAGCCTTCCAATTTTTTGATCAGAACAAAAGTGAGTATATTGAGATTGAGGAGCTGCGTAGCGCCTTATCTGATGATCTTGACACAAACAGTGAAGAAGTTGTCAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAGGATAAGTTACGACGAATTTTCTACTATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGACAGTACTCACGAGAGAGGTTTGCCAGTCTCAGCCTTACGTTGATGAGGGACGGGTCATTGCATTTAAACAATGAAAAACAATGA 1605 0.4816 MGNCCATPSTDETANKKGKKGKKENPFAIDYGFNATAANGSKLTVLKSPTGREIEARYELGRELGRGEFGITYLCTDKGTGEELACKSISKKKLRTAIDIEDVRREVEIMRHLPQHANIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKQGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGEKFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPKRRLTAQDVLDHPWLQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQVMDTNNRGKINIDELRVGLHKLGHQVPESDVQALMDAGDVDGDGHLDYGEFVAISVHLRKMGNDEHLRKAFQFFDQNKSEYIEIEELRSALSDDLDTNSEEVVNAIMHDVDTDKDGRISYDEFSTMMKAGTDWRKASRQYSRERFASLSLTLMRDGSLHLNNEKQ* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1177 534 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 15 513 - -
Gso3g1177 534 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Gso3g1177 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Gso3g1177 534 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Gso3g1177 534 Gene3D Phosphorylase Kinase; domain 1 60 143 - -
Gso3g1177 534 CDD STKc_CAMK 57 315 - -
Gso3g1177 534 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Gso3g1177 534 ProSiteProfiles Protein kinase domain profile. 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1177 534 MobiDBLite consensus disorder prediction 1 22 - -
Gso3g1177 534 Gene3D - 325 499 - -
Gso3g1177 534 SUPERFAMILY Protein kinase-like (PK-like) 57 325 IPR011009 -
Gso3g1177 534 SMART efh_1 435 463 IPR002048 GO:0005509
Gso3g1177 534 SMART efh_1 471 499 IPR002048 GO:0005509
Gso3g1177 534 SMART efh_1 399 427 IPR002048 GO:0005509
Gso3g1177 534 SMART efh_1 363 391 IPR002048 GO:0005509
Gso3g1177 534 Pfam Protein kinase domain 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1177 534 SUPERFAMILY EF-hand 345 522 IPR011992 -
Gso3g1177 534 SMART serkin_6 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1177 534 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Gso3g1177 534 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Gso3g1177 534 Pfam EF-hand domain pair 434 497 IPR002048 GO:0005509
Gso3g1177 534 Pfam EF-hand domain pair 364 423 IPR002048 GO:0005509
Gso3g1177 534 Gene3D Transferase(Phosphotransferase) domain 1 144 324 - -
Gso3g1177 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 513 - -
Gso3g1177 534 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Gso3g1177 534 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1177 Gso-Chr3 37308091 37312631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1177 1 532 EF-hand Containing Proteins AT5G19450 78.612 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso3g1177 Pkinase 4.4e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1177 K13412 - gmx:100808399 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1177 3 37308091 37312631 Gso3g1177 3 37308091 37312631 ECH
Gso19g1176 19 40141741 40146490 Gso3g1177 3 37308091 37312631 GST
Gso3g1177 3 37308091 37312631 Gso2g1555 2 33194060 33201751 PCT
Gso2g1555 2 33194060 33201751 Gso3g1177 3 37308091 37312631 PCT