Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1174 ATGGGGACTCCGGAATTCCCTGATCTCGGCAAGCATTGCTCTGTTTCTTGTTGCAAGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTAATCAGATATATTGTTTGGAGCACCGAGGTTATATTAAACATAAATGCACAAAGGCCAACAAACATGATGTCACAGTTGCCATATGCCCTCTTTGTGCCAAAGGAGTTCGCCTCATTCCAGATCAAGACCCAAACATAACATGGGACAACCATGTTAACGTTGATTGTGACCCATCAAACTACGAGAAAATCACAAAGAAGAGAAAATGCCCTGCCCCTGGATGCAAAGAGGTCTTAGTATTCTCCAACACAATCAAGTGCCGGGACTGCTTGAAAGACCATTGCTTGAAGCACCGGTTTGGCCCTGACCACAAATGTTCCGGTCCCAAAAAGTTGGAGACAAGTTTTTCATTCATGAGTCTTTTGAATAGGAGTAGAAAAGAGGAGCCAAAGCCCAATTTAACTTCAACAGCACCATCTAAGTGGAGTTCAAGCTTTCTCAAAGTGGCTTCCAACATTCGCGCCTCAGCTCAAGTGAGCATGTCGAAATTGGGCGATGAAATTAACCAAGTTTGGCAGGCAGCTACTACAAGAGACGGGGTGGGGCAAAGCAGTGGCAGTGGAAATAGAAATGATCATCAAGTGGAGCAATGCCCTCAGTGTGGATCAAAGTTTTCCTCTGTGACTGCTTTGGTGGATCATGTGCAAAAGGTTCATGAAAGAAATGGAAACCGATTAGGGGTTAAGAAGATTGATGCATGTCCTAAGTGTAGTAGGGGATTTCTTGATCCTGTGTCCCTTGTGGAGCATGTTGAGAGGGATCATGGAGGTGGTTCTAGAGCATAG 879 0.4516 MGTPEFPDLGKHCSVSCCKQLDFLPFTCDRCNQIYCLEHRGYIKHKCTKANKHDVTVAICPLCAKGVRLIPDQDPNITWDNHVNVDCDPSNYEKITKKRKCPAPGCKEVLVFSNTIKCRDCLKDHCLKHRFGPDHKCSGPKKLETSFSFMSLLNRSRKEEPKPNLTSTAPSKWSSSFLKVASNIRASAQVSMSKLGDEINQVWQAATTRDGVGQSSGSGNRNDHQVEQCPQCGSKFSSVTALVDHVQKVHERNGNRLGVKKIDACPKCSRGFLDPVSLVEHVERDHGGGSRA* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1174 292 Gene3D - 2 61 IPR035896 -
Gso3g1174 292 Gene3D Classic Zinc Finger 197 289 - -
Gso3g1174 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Gso3g1174 292 ProSitePatterns Zinc finger C2H2 type domain signature. 229 250 IPR013087 -
Gso3g1174 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 255 IPR013087 -
Gso3g1174 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Gso3g1174 292 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gso3g1174 292 ProSitePatterns Zinc finger C2H2 type domain signature. 265 286 IPR013087 -
Gso3g1174 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gso3g1174 292 SUPERFAMILY AN1-like Zinc finger 4 60 IPR035896 -
Gso3g1174 292 Gene3D - 81 150 IPR035896 -
Gso3g1174 292 Pfam C2H2-type zinc finger 228 250 - -
Gso3g1174 292 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 292 - -
Gso3g1174 292 SMART c2h2final6 227 250 IPR013087 -
Gso3g1174 292 SMART c2h2final6 263 286 IPR013087 -
Gso3g1174 292 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Gso3g1174 292 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Gso3g1174 292 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gso3g1174 292 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 292 - -
Gso3g1174 292 MobiDBLite consensus disorder prediction 208 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1174 Gso-Chr3 37269880 37271979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1174 1 292 C2H2 Transcription Factor Family AT2G41835 60.135 9.29e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso3g1174 zf-AN1 4.4e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1172 19 40103562 40105625 Gso3g1174 3 37269880 37271979 GST
Gso3g1174 3 37269880 37271979 Gso2g1557 2 33415317 33419209 PCT
Gso2g1557 2 33415317 33419209 Gso3g1174 3 37269880 37271979 PCT