Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1172 ATGGAATTTCTATGCTTGCTGTTGTATATACTGGTAGCTTGGTGTCTTTCAAGTTCTGAACTTGTTGGTGCTGAGCTTCAGGACCAAGATATATTACATGCCATCAACCAAGAGCTGAGAGTCCCTGGATGGGGTGATGGCAACAACTCAGATTACTGCAATTGGCAAGGTGTCAGCTGTGGTAACAACTCAATGGTGGAGGGCTTGGATCTGTCTCACCGGAATCTTCGAGGTAACGTAACTCTAATGTCTGAGCTCAAAGCTTTGAAGCGGCTCGATCTTTCGAATAATAACTTTGATGGATCGATTCCTACTGCTTTTGGAAATTTATCTGATCTTGAAGTTCTAGATTTGACTTCAAATAAGTTCCAAGGTTCAATTCCACCTCAGTTGGGTGGTCTCACAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGTGGGAGAGATACCAATGGAACTTCAGGGCTTAGAGAAACTGCAGGATTTTCAAATCTCTAGTAATCATTTGAGTGGTCTTATACCTTCTTGGGTGGGAAATTTAACCAATTTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCAGATGATCTAGGCTTGATTTCTGACCTTCAAATACTTAACCTGCACTCTAACCAGCTTGAAGGCCCAATACCAGCAAGCATTTTTGTTCCAGGGAAGCTAGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGTGAACTTCCTAAAGAAATTGGGAATTGCAAAGCCCTTTCCAGCATTCGAATTGGAAACAACCATCTAGTAGGTACCATTCCAAAGACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCCGATAATAATAATCTTTCTGGTGAGGTTGTGTCTGAATTTGCTCAGTGTTCTAATCTGACACTCCTGAATTTGGCTTCAAATGGGTTTACTGGAACAATTCCACAAGACTTTGGACAACTTATGAACCTTCAGGAATTAATTCTTTCTGGAAATAGCCTATTCGGTGATATTCCAACATCGATTCTGAGTTGCAAAAGTCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCTCCCGGTTGCAGTACATGCTGTTGGATCAGAATTTCATTACTGGAGAGATCCCTCATGAAATTGGAAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGTAATATTTTGACTGGAGGTATTCCTCCTGAGATTGGTCGCATTAGGAACTTGCAGATAGCTTTAAATTTGAGCTTCAATCATCTCCATGGACCACTGCCCCCTGAATTAGGAAAACTGGACAAACTTGTTTCTCTGGATGTTTCAAACAATCGGCTATCAGGTAACATCCCACCTGAGCTTAAAGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTCGGAGGTCCTGTGCCAACATTTGTACCATTTCAGAAGAGTCCCAGTTCAAGTTATTTGGGCAATAAAGGGCTTTGTGGAGAGCCTTTGAACTCTTCATGTGGAGACCTTTATGATGATCACAAGGCTTACCATCACAGGGTTTCTTACAGAATCATACTGGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAGGAAAAAGTAGCCAAAGATGCTGGGATTGTTGAAGATGGCATCAATGACAACCCAACTATAATTGCAGGGACGATTTTTGTTGATAATCTAAAACAAGCAGTAGATCTTGATGTCGTCGTTAAAGCAACACTGAAAGACAGCAACAAGCTCAGCAGTGGAACTTTCAGCACTGTTTACAAGGCAATCATGCCTTCCGGGGTGGTCTTATCTGTTAGGAGACTGAAGTCTGTAGACAAGACAATAATCCACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTCAGCAAAGTTTGTCATGAAAATCTAGTGCGTCCCATTGGCTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAATGGAACATTGGCTCAGCTTCTTCATGAATCTACCAGGAAACCTGAATATCAGCCTGACTGGCCCTCTAGATTATCCATTGCCATTGGTGTGGCAGAAGGGTTGGCTTTCCTTCATCATGTGGCAATCATCCATCTTGATATCTCTTCTGGCAATGTTCTCTTGGATGCAAATTCCAAGCCGGTGGTTGCGGAGATTGAGATTTCAAAACTTCTTGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCTTTTGGTTACATACCACCAGAATATGCATATACTATGCAAGTCACTGCACCAGGAAATGTTTATAGCTATGGTGTTGTTCTGTTGGAAATCCTTACAACTAGACTACCAGTTGATGAGGACTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCACAGTGCTCCGGTAAGAGGGGAAACTCCAGAGCAGATATTGGATGCTAAGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTCGCGTTGCTGTGCACTGACAACACACCAGCCAAACGACCAAAAATGAAGAATGTCGTGGAAATGCTTCGAGAGATAAAAGAAAATTGA 2667 0.4128 MEFLCLLLYILVAWCLSSSELVGAELQDQDILHAINQELRVPGWGDGNNSDYCNWQGVSCGNNSMVEGLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGSIPTAFGNLSDLEVLDLTSNKFQGSIPPQLGGLTNLKSLNLSNNVLVGEIPMELQGLEKLQDFQISSNHLSGLIPSWVGNLTNLRLFTAYENRLDGRIPDDLGLISDLQILNLHSNQLEGPIPASIFVPGKLEVLVLTQNNFSGELPKEIGNCKALSSIRIGNNHLVGTIPKTIGNLSSLTYFEADNNNLSGEVVSEFAQCSNLTLLNLASNGFTGTIPQDFGQLMNLQELILSGNSLFGDIPTSILSCKSLNKLDISNNRFNGTIPNEICNISRLQYMLLDQNFITGEIPHEIGNCAKLLELQLGSNILTGGIPPEIGRIRNLQIALNLSFNHLHGPLPPELGKLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLFGGPVPTFVPFQKSPSSSYLGNKGLCGEPLNSSCGDLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVEDGINDNPTIIAGTIFVDNLKQAVDLDVVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHENLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRKPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANSKPVVAEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGETPEQILDAKLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKEN* 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1172 888 Pfam Leucine Rich Repeat 328 350 IPR001611 GO:0005515
Gso3g1172 888 Gene3D Phosphorylase Kinase; domain 1 581 685 - -
Gso3g1172 888 SMART LRR_typ_2 110 133 IPR003591 -
Gso3g1172 888 SMART LRR_typ_2 134 157 IPR003591 -
Gso3g1172 888 SMART LRR_typ_2 206 230 IPR003591 -
Gso3g1172 888 SMART LRR_typ_2 447 470 IPR003591 -
Gso3g1172 888 SMART LRR_typ_2 158 181 IPR003591 -
Gso3g1172 888 SMART LRR_typ_2 326 350 IPR003591 -
Gso3g1172 888 SMART LRR_typ_2 86 109 IPR003591 -
Gso3g1172 888 SUPERFAMILY Protein kinase-like (PK-like) 606 885 IPR011009 -
Gso3g1172 888 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Gso3g1172 888 ProSitePatterns Tyrosine protein kinases specific active-site signature. 730 742 IPR008266 GO:0004672|GO:0006468
Gso3g1172 888 Gene3D Ribonuclease Inhibitor 230 519 IPR032675 -
Gso3g1172 888 Gene3D Ribonuclease Inhibitor 61 229 IPR032675 -
Gso3g1172 888 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 886 - -
Gso3g1172 888 Gene3D Transferase(Phosphotransferase) domain 1 686 888 - -
Gso3g1172 888 Pfam Protein tyrosine and serine/threonine kinase 610 882 IPR001245 GO:0004672|GO:0006468
Gso3g1172 888 ProSiteProfiles Protein kinase domain profile. 607 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso3g1172 888 SUPERFAMILY L domain-like 254 513 - -
Gso3g1172 888 SUPERFAMILY L domain-like 42 294 - -
Gso3g1172 888 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 7 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1172 Gso-Chr3 37248176 37252365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1172 1 887 Receptor kinase-like Gene Family AT2G41820 72.584 0.0 1302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso3g1172 PK_Tyr_Ser-Thr 1.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1172 - - gmx:100805933 1738.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1172 3 37248176 37252365 Gso3g1172 3 37248176 37252365 ECH
Gso19g1170 19 40090149 40094532 Gso3g1172 3 37248176 37252365 GST