Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1161 ATGGCTTCGTCTTCCTCCGATCCGGGAAAGTCCGCGGAGACGTCGGAGGCCGCGGCGTTGGCGGTGGCGAACGACCAGCTCTTGCTCTACAGAGGATTGAAGAAGGCCAAGAAGGAAAGAGGTTGCACGGCGAAAGAGCGCATCAGCAAAATGCCTCCGTGCGCCGCCGGCAAACGCAGCTCCATATATCGCGGCGTCACGAGGCATAGGTGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAGAGTACGTGGAACCAAAATCAGAATAAGAAGGGAAAGCAAGTTTATTTGGGGGCGTATGATGACGAGGAAGCGGCGGCCAGAGCATATGATCTTGCTGCTCTCAAATATTGGGGTCCTGGGACTCTCATTAACTTTCCTGTGACGGATTATGCAAGAGATCTTGAAGAAATGCAGAATGTGTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGACTAGCAAAATATCGTGGACTCTCCAGTCGATGGGATCCTACATATGGCCGTATGTCTGGATCTGATTACTTCAATAGCATGCATTATGGGGATGATTCTGCAGCAGAAAGTGAATATGTAAGTGGCTTCTGCTTAGACAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGAGTAGACATTCTGATGCTGGGACAAGATTATCAGAAGAAAAGAAACTTGGTTCTGCTGGAGATGTTTGCAGCGAACTTAAGCAATTGGAGCAGAAAGTTCAACCTATGGAACCTTACCAGATGCCACAGTTAGGCAGGCTACACAATGAGAAGAAGCATAGAAGTTCTTCACTCTCTGCCTTAAGTATCTTGTCACAATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCATCAAAGAGACAGGAAAATAGTACTGATAATGATGAGAATGAAAACAAAAATACAATCAACAAGTTGGATCATGGCAAGGCAGTTGAGAAACCATCAAATCATGATGGGGGCAATGATCGGCTCAACATTGCAATGGGAATGAGTGGAACAATGTCTCTTCAAAGAAATGCTTACCCATTGACTCCATTCTTGTCCGCACCACTTTTAACAGCCTACAATACTGTTGATCCATTGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCCATGCTTCCTGCTGGCCTTTCTCGTACAGCTGAGGTTACAAAGACCGAGACCAGTTTGGAGACCAGTTCAACGTACACTATGTTTCAGCCAGAGGAATGA 1266 0.4605 MASSSSDPGKSAETSEAAALAVANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYARDLEEMQNVSREEYLASLRRKSSGFSRGLAKYRGLSSRWDPTYGRMSGSDYFNSMHYGDDSAAESEYVSGFCLDRKIDLTSHIKWWGSNKSRHSDAGTRLSEEKKLGSAGDVCSELKQLEQKVQPMEPYQMPQLGRLHNEKKHRSSSLSALSILSQSAAYKSLQEKASKRQENSTDNDENENKNTINKLDHGKAVEKPSNHDGGNDRLNIAMGMSGTMSLQRNAYPLTPFLSAPLLTAYNTVDPLVDPVLWTSLVPMLPAGLSRTAEVTKTETSLETSSTYTMFQPEE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1161 421 PANTHER BNAA03G19580D PROTEIN 7 413 - -
Gso3g1161 421 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 413 - -
Gso3g1161 421 ProSiteProfiles AP2/ERF domain profile. 62 128 IPR001471 GO:0003700|GO:0006355
Gso3g1161 421 SMART rav1_2 62 134 IPR001471 GO:0003700|GO:0006355
Gso3g1161 421 Pfam AP2 domain 62 120 IPR001471 GO:0003700|GO:0006355
Gso3g1161 421 MobiDBLite consensus disorder prediction 298 336 - -
Gso3g1161 421 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Gso3g1161 421 PRINTS Ethylene responsive element binding protein signature 110 130 IPR001471 GO:0003700|GO:0006355
Gso3g1161 421 Gene3D AP2/ERF domain 62 130 IPR036955 GO:0003700|GO:0006355
Gso3g1161 421 SUPERFAMILY DNA-binding domain 61 129 IPR016177 GO:0003677
Gso3g1161 421 MobiDBLite consensus disorder prediction 295 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1161 Gso-Chr3 37101284 37105148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1161 21 419 AP2-EREBP Transcription Factor Family AT2G41710 63.902 5.06e-166 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso3g1161 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1161 K09285 - gmx:100814117 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1159 19 39847296 39851307 Gso3g1161 3 37101284 37105148 GST