Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1160 ATGGGAGCTGCGTGGAGGCAGTTGAAGGTCATGCTCCGCAAGAACTGGCTCCTCAAGATTCGCCACCCCTTCGTCACTGCCGCCGAGATTTTGCTCCCTACGATTGTGTTGTTGCTGTTAGTAGCTGTAAGGACCAAAGTGGATACACAAATTCATCCAGTTCAGCCGCACATTCAAAAAGATATGTTTGTGGAAGTGGGCAATGGTATATCCCCCAACTTTCAACAAGTTTTGCAATCGTTGTTGGATAGGGGAGAGTATTTAGCTTTTGCGCCAGATACCAATGAGACCAAGCTGTTGATAGACGTAGTCTCAATAAAATTTCCACTCTTGAAGCTAGTTAGTAGAGTATACAAAGATGAGGTAGAGTTGGAAACCTACATCCGTTCAGATGCTTATGGTACCTGCAATCAAGCAAGGAATTGTTCAAATCCCAAAATTAAAGGAGCAGTTGTGTTTTATGAACAAGGTCCTCAATCATTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCCGGTTTTCCAGATGTTACAACAATAATGGATACAAATGGCCCTTTTCTTAATGACTTGGAACTTGGTGTTAGTGCTGTACCAACAATGCAATACAGCTTCAGTGGGTTTTTGACTCTCCAGCAAATGGTTGATTCGTTCATAATATTAATAGCGCAGCAGTCTGACTTCAATTTCAATGCTGAAAATCTAGAGCTTCCTCTTCCAGGCTTCTATGACAATAATTTCTCATTGAAAAATCCTTGGACTCAGTTTAACCCTGCACGCATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGATCAGTTCCAGTCAATCATAAAGAGAGTCATGGGAATATTGTACTTATTGGGGTTTCTCTATCCAATTTCTCGCCTAATCAGTTATTCTGTGTATGAGAAGGAACAGAAGATTAAAGAAGGACTCTATATGATGGGCCTGAACGATGGTATATTTCACCTTTCTTGGTTTATCACATATGCTTTGCAGTTTGCAATTTCTTCTGGGATCCTTACAGCTTGCACAATGGATAATTTATTCAAGTATAGTGATAAGACACTGGTGTTTGCATACTTTTTCGTTTTTGGGCTTAGTGCAATCATGCTCTCATTCTTTATATCAACGTTTTTCAAACGGGCCAAAACAGCTGTAGCTGTTGGAACTCTGGCGTTTCTTGGAGCCTTTTTCCCTTATTACACTGTCAACGAGGAGGGAGTTTCAATAATCTTGAAGGTTATTGCTTCCTTACTTTCACCTACAGCCTTTGCTTTGGGTTCGATCAACTTTGCTGATTATGAGCGTGCTCATGTTGGACTCCGTTGGAGCAACATATGGCGGGAATCATCTGGAGTGAACTTTTTGGCATGTCTTCTGATGATGATACTTGATACACTGCTATATTGTGCGACTGGACTTTATTTTGACAAGGTTCTTCCAAGGGAGTATGGACTGAGATACCCATGGAGCTTTATTTTCCAAAAGGACTTCTGGAGGAAGAAAAAAATTCTAAAACATTGTTCCTCCGGTTTTAAAGTTGAAATATCTGATAAAAATTCTGAGTCAGAAGGGAATCTTTCAGGGGAATATACTTCCAAATCTGGCATAGAAGCAATAAGCTTAGAGATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTGCATAAAGTTTATGCTACGAAGAAAGGAGATTGCTGTGCTGTTAACTCATTACAGCTGACACTGTATGAAAACCAGATTCTTGCCCTTCTAGGACATAATGGAGCTGGGAAAAGCACGACAATCTCAATGCTTGTTGGTCTGCTTCCTCCTACTTCTGGGGATGCTTTGGTGTTTGGAAAGAACATTGTATCAGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACATGATATACTCTTTCCTGAATTAACAGTTAGAGAGCATTTAGAACTATTTGCGACATTAAAGGGTGTGGAGGAACACTCATTGGACAATGCTGTTATTAATATGGCGGATGAGGTGGGCCTGGCAGATAAAATCAACAGTATTGTGAGAACTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCGTTGATTGGAAGCAGTAAGGTTATAGTCCTTGATGAACCTACTAGTGGAATGGATCCATACTCGATGCGCTTGACTTGGCAATTAATAAAAAAAATTAAGAAGGGAAGGATAATTTTGCTAACTACACATTCTATGGATGAAGCAGATGAACTAGGTGACCGCATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCACTTTTCTTGAAGCATCATTATGGAGTTGGCTATACTCTAACTCTTGTGAAGTCAGCTCCTACTGCTTCTATAGCTGGTGATATTGTATACCGTCATGTTCCATCTGCAACATGTGTAAGCGAGGTTGGAACTGAGATTTCTTTCAGGCTTCCAATGGCATCCTCGTCAGCCTTTGAGAGGATGTTTAGAGAAATTGAAGGTTGCATGAAAAAAACAGTTTCAAATATGGAATTGAGTGGAAATGGTGACAAAGACAGTCTTGGTATTGAAAGCTATGGTATATCTGTAACAACCCTGGAGGAGGTATTTTTGAGAGTTGCAGGATGTGACTATGATGAAGTTGAATGCTTTGTAGAAAATAACCATACCCATAAATCAGACTCGGTGGCTTCTCTTCCTACTAATGATCATCCTTCCACAAAAATAAGTTGTCTTAAGTTTTTTGGAAATTATAAGAAGATTTTTGGTTTCATGACTACCATGTTGGGAAGAGCCTGTGGCTTAATTTTTGCCACAGTTATTAGTTTTATCAACTTCTTGGGTATGCAGTGCTGTAGCTGTTGTTTCATTACAAGGTCAACATTTTGGCAACATTCTAAAGCCTTATTCATTAAAAGGGCAATATCTGCTCGGAGAGATCACAAAACAATTATTTTCCAGCTAATGATTCCTACTCTCTTCTTGTTTATTGGTCTTCTATTTCTGAAGCTCAAGCCACATCCTGATCAGCAATCACTCACCCTTTCAACTTCTCATTTTAATCCTCTATTGAGTGGTGGGGGTGGAGGAGGCCCAATTCCGTTTAATCTATCTTTGCCAATTGCTGAAAAGGTAGCACAAAATGTCATCGGAGGGTGGATTCAGAGGTTCAAGCCAAGCTCGTACAGATTCCCTAATTCAGAAAAGGCATTGGCTGATGCAGTGGAAGCGGCAGGACCAACCTTGGGACCTGCTCTACTTTCAATGAGTGAATATTTGATGTCAAGCTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGACCAGAATAATGATGGAAGCTTAGGATACACTGTATTACACAACTGTTCCTGTCAACATGCTGCTCCTACATTTATCAATTTGATGAATTCTGCAATTCTCAGGCTTGCAACTCATGACACAAACATGACAATTCAGACACGCAACCACCCCTTACCAACGACACAAAGCCAGCGCTTACAACGTCATGACCTGGATGCCTTCTCTGCTGCAGTTATTGTCAATATTGCTTTCTCTTTTATACCTGCCTCATTTGCCGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCAGCAACAACTAATCAGTGGGGTTTCTGTCCTGTCATATTGGGCTTCTACATTTATTTGGGACTTCGTGAGCTTCTTGTTTCCGGCCTCTTTTGCCATAGTTCTCTTTTACGTCTTTGGTCTGGATCAGTTTGTTGGAGGGGTTTCTTTGTTACCAACAATCCTCATGCTTTTGGAATATGGACTTGCAATCGCATCATCAACTTATTGCCTTACATTTTTCTTTTTTGACCATACCATGGCGCAGAATGTGGTTCTCTTGATCCACTTTTTCTCTGGATTGATACTGATGGTTATCTCATTCATTATGGGACTCATGCCATCAACAATGAGTGCCAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTCGCTGATGGTCTTGCTTCACTAGCTCTTTTACGGCAAGGAATGAAAGATAAAACAAGTGATGGGGTGTTTGATTGGAATGTTACTGGGGCTTCCATCTGTTATCTTGCTGTTGAGAGCTTTAGTTACTTTCTGTTGACGCTTGCACTTGAAATGTTTCCTTCTCTCAATTTGACTTCATTCATGATCAAGAAGTGGTGGGGAAAAATTAATATCTTCCAGCATAATAATCCCTATTTGGAACCTCTGTTAGAATCATCTTCCGAAACTGTTGCTATGGACTTCGATGAAGATGTAGATGTGAAAACAGAGAGAAATAGAGTACTTTCAGGTTCCCTTGACAATTCCATTATCTACCTTCGCAATCTCCGTAAGGTATATTTTGAGGAGAAGCATCATGGGAGAAAGGTTGCAGTAGATTCATTAACTTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACTATTTCTATGCTATGTGGGGAAGAATGTCCTTCTGATGGGACTGCTTTTATTTTTGGCAAAGATATATGTTCCCATCCGAAGGCTGCTCGCCGATATATTGGATATTGTCCACAATTTGATGCTCTATTGGAATTCTTAACTGTCCGAGAACATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAGATTTTGCAATAGACAATGTTGTTATGGAAAAGTTGACAGAATTTGACTTATTGAAGCATGCTAATAAACCATCATTTTCACTTAGTGGAGGGAATAAACGAAAACTGTCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGGATCTCAACAAGGCGAGGAAAGACTGCAGTAATTCTTACTACTCACAGCATGAATGAAGCTCAAGCCTTATGTACCAGAATAGGGATAATGGTTGGTGGACGATTACGATGCATTGGAAGTCCACAGCATCTAAAAACAAGATTTGGGAATCATCTGGAACTAGAGGTCAAACCTACTGAAGTGAGTTCTGCAGACTTGCAAAACCTCTGCCAAGCTATTCAAGAAAGACTTCTTGATGTCCCTTCTCATCCTAGAAGCTTACTTAATGACCTTGAAATTTGCATTGGGGGCACTGACTCCGTCACATCAGGAAATACATCCATTGCGGAGATTAGCTTGACACGAGAAATGATAGGCTTAATTGGGCGCTGGCTTGACAATGAAGAAAGAGTAAAAACACTAATCTCTGGTACACCTGTCTGTGATGGAGCTTCTCAGGAACAGTTATCAGAACAACTGTTTCGAGATGGTGGCATTCCATTGCCAGTATTTTCTGAGTGGTGGCTGTCTAAACAAAAATTCTCAGAAATTGATTCTTTTATTCTCTCTTCATTTCGTGGGGCAAGATGCCAAGGGTGCAATGGTTTGAGCATCAGATATCAGTTACCATATAATGAAGATTTTTCCCTAGCAGATGTTTTTGGACTTCTTGAAAGAAACAGAAATAGATTAGGGATTGCAGAGTACAGCATCAGCCAATCAACTCTCGAGACAATATTTAATCATTTTGCAGCTAATCCATGA 5679 0.4025 MGAAWRQLKVMLRKNWLLKIRHPFVTAAEILLPTIVLLLLVAVRTKVDTQIHPVQPHIQKDMFVEVGNGISPNFQQVLQSLLDRGEYLAFAPDTNETKLLIDVVSIKFPLLKLVSRVYKDEVELETYIRSDAYGTCNQARNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVSAVPTMQYSFSGFLTLQQMVDSFIILIAQQSDFNFNAENLELPLPGFYDNNFSLKNPWTQFNPARIRIAPFPTREYTDDQFQSIIKRVMGILYLLGFLYPISRLISYSVYEKEQKIKEGLYMMGLNDGIFHLSWFITYALQFAISSGILTACTMDNLFKYSDKTLVFAYFFVFGLSAIMLSFFISTFFKRAKTAVAVGTLAFLGAFFPYYTVNEEGVSIILKVIASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFLACLLMMILDTLLYCATGLYFDKVLPREYGLRYPWSFIFQKDFWRKKKILKHCSSGFKVEISDKNSESEGNLSGEYTSKSGIEAISLEMKQQELDGRCIQIRNLHKVYATKKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFATLKGVEEHSLDNAVINMADEVGLADKINSIVRTLSGGMKRKLSLGIALIGSSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIAGDIVYRHVPSATCVSEVGTEISFRLPMASSSAFERMFREIEGCMKKTVSNMELSGNGDKDSLGIESYGISVTTLEEVFLRVAGCDYDEVECFVENNHTHKSDSVASLPTNDHPSTKISCLKFFGNYKKIFGFMTTMLGRACGLIFATVISFINFLGMQCCSCCFITRSTFWQHSKALFIKRAISARRDHKTIIFQLMIPTLFLFIGLLFLKLKPHPDQQSLTLSTSHFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVIGGWIQRFKPSSYRFPNSEKALADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLATHDTNMTIQTRNHPLPTTQSQRLQRHDLDAFSAAVIVNIAFSFIPASFAVSIVKEREVKAKQQQLISGVSVLSYWASTFIWDFVSFLFPASFAIVLFYVFGLDQFVGGVSLLPTILMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLIHFFSGLILMVISFIMGLMPSTMSANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFSYFLLTLALEMFPSLNLTSFMIKKWWGKINIFQHNNPYLEPLLESSSETVAMDFDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYFEEKHHGRKVAVDSLTFSVQEGECFGFLGTNGAGKTTTISMLCGEECPSDGTAFIFGKDICSHPKAARRYIGYCPQFDALLEFLTVREHLELYARIKGVPDFAIDNVVMEKLTEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSADLQNLCQAIQERLLDVPSHPRSLLNDLEICIGGTDSVTSGNTSIAEISLTREMIGLIGRWLDNEERVKTLISGTPVCDGASQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILSSFRGARCQGCNGLSIRYQLPYNEDFSLADVFGLLERNRNRLGIAEYSISQSTLETIFNHFAANP* 1893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1160 1892 Pfam ABC transporter 1486 1628 IPR003439 GO:0005524
Gso3g1160 1892 Pfam ABC transporter 580 723 IPR003439 GO:0005524
Gso3g1160 1892 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1656 1889 - -
Gso3g1160 1892 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1318 1665 - -
Gso3g1160 1892 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 5 1318 - -
Gso3g1160 1892 Gene3D - 1456 1706 IPR027417 -
Gso3g1160 1892 Gene3D - 547 796 IPR027417 -
Gso3g1160 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1463 1693 IPR027417 -
Gso3g1160 1892 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 798 IPR027417 -
Gso3g1160 1892 CDD ABC_subfamily_A 1464 1690 - -
Gso3g1160 1892 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 793 IPR003439 GO:0005524
Gso3g1160 1892 ProSitePatterns ABC transporters family signature. 1601 1615 IPR017871 GO:0005524
Gso3g1160 1892 Pfam ABC-2 family transporter protein 992 1394 - -
Gso3g1160 1892 Pfam ABC-2 family transporter protein 212 476 - -
Gso3g1160 1892 CDD ABC_subfamily_A 560 781 - -
Gso3g1160 1892 SMART AAA_5 588 770 IPR003593 -
Gso3g1160 1892 SMART AAA_5 1494 1681 IPR003593 -
Gso3g1160 1892 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1464 1702 IPR003439 GO:0005524
Gso3g1160 1892 ProSitePatterns ABC transporters family signature. 695 709 IPR017871 GO:0005524
Gso3g1160 1892 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1318 1665 IPR026082 GO:0016021|GO:0055085|GO:0140359
Gso3g1160 1892 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1656 1889 IPR026082 GO:0016021|GO:0055085|GO:0140359
Gso3g1160 1892 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 5 1318 IPR026082 GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1160 Gso-Chr3 37034502 37097091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1160 536 796 Calmodulin-binding Proteins AT2G36910 25.830 1.13e-15 81.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1160 3 37034502 37097091 Gso3g1160 3 37034502 37097091 ECH