Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1159 ATGGAAGGAACAAGTGAAAAGGGGTTGTGGGAATGTGGAAGGAAGTGCACTCCACCACCGTTTTTGTTGAAGACTTATATGCTCGTGGACGATCCGGCCACGGACGACGTCGTTTCATGGAATTCCGAAGGGACGGCGTTCGTGGTGTGGCAGCCAGCGGAGTTTGCTCGTGATCTCCTCCCAACACTCTTCAAACACAGCAACTTCTCTAGCTTTGTGCGCCAGCTCAATACTTATGGCTTTCGTAAAATTGCAACAAGCAGATGGGAGTTTTTCAATGACAGGTTCAAGAAAGGTGAAAGAGAACTTCTACATGAGATTCGGCGAAGAAAAGCTTGGACCAGCAAGCAACAACCAAAGGCACCAAACCAAGCAACACTCCAAGACTCTGATGAAGATCAAAGGTCCTCATCAATCTCATCATCTTCTGGTTACACTACCCTTGTGGATGAAAACAAGCGACTCAAGAAGGAGAATGGGGTGTTGAACTCTGAGCTCACAAGTATGAAAAGGAAGTGCAAGGAACTTCTTGATTTGGTTGCCAAATATTCATCACATGCAAAAGAGGAGAAAGAGGATGAAAGGCCAATGCTGTTTGGAGTGAGATTAGATGTTCAAGGAGAGAGGGAGATGAAGAGGCATAGAGCTGAGATGAGTGAAAGCGCAAGCATTATGTTGTCTCAGTCATGCAAATAG 696 0.4583 MEGTSEKGLWECGRKCTPPPFLLKTYMLVDDPATDDVVSWNSEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKIATSRWEFFNDRFKKGERELLHEIRRRKAWTSKQQPKAPNQATLQDSDEDQRSSSISSSSGYTTLVDENKRLKKENGVLNSELTSMKRKCKELLDLVAKYSSHAKEEKEDERPMLFGVRLDVQGEREMKRHRAEMSESASIMLSQSCK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1159 231 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso3g1159 231 MobiDBLite consensus disorder prediction 116 144 - -
Gso3g1159 231 Coils Coil 152 172 - -
Gso3g1159 231 SUPERFAMILY "Winged helix" DNA-binding domain 17 110 IPR036390 -
Gso3g1159 231 MobiDBLite consensus disorder prediction 112 144 - -
Gso3g1159 231 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso3g1159 231 MobiDBLite consensus disorder prediction 210 231 - -
Gso3g1159 231 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 5 231 - -
Gso3g1159 231 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso3g1159 231 Gene3D - 13 111 IPR036388 -
Gso3g1159 231 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso3g1159 231 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso3g1159 231 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso3g1159 231 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 231 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1159 Gso-Chr3 37017493 37021001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1159 18 204 HSF AT2G41690 52.657 1.96e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso3g1159 HSF_DNA-bind 4.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1159 K09419 - gmx:100802739 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1159 3 37017493 37021001 Gso3g1159 3 37017493 37021001 ECH
Gso19g1158 19 39830594 39833370 Gso3g1159 3 37017493 37021001 GST