Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1158 ATGTTTCCTACCAAAATGGATTTGCTGGCTAATGTTGCAGTGGAGAATAAGAGGAGAGTGTGTCTGGTTTGGGAAGATTTGACAGTGGTGGCATCAAGTGTTAACAATAGTCCAAAAAGGGAATTGTTAAAAGGGTTAAGTGGTTATGCAGAACCTAACCGGATTATGGCACTCATTGGTCCTTCAGGATCCGGGAAATCTACTGTACTTGCTGCACTGGCTGGGATACTTCCCACCAATGTTAGCATGACAGGAAATGTACTACTCAACGGGACTACCAGAAGTACCGGCTGCAGAGATATTTCTTATGTTACTCAAGAAGATTATTTTTTGGGAACTCTAACAGTGAAGGAAACCCTGACTTATGCAGCTCATTTGAGACTTCCTGCTGATATGACTAAAAATGAGATTGATAAGGTTGTAACCAAGATATTGGCTGAAATGGGTCTGCAAGATAGTGCAGATAGCAGACTTGGGAATTGGCATTTGAGAGGCATAAGTAGTGGAGAGAAAAGAAGGCTTAGCATAGGCATTGAGATCTTAACTCAACCTCATGTAATGTTTCTGGATGAACCCACTAGTGGGTTGGATAGTGCAGCTGCTTTCTATGTGATTTCTTCTCTGTCAAACATTGCACATGATGGAAGAATAGTTATATGCTCCATTCACCAGCCAAGTGGTGAAGTTTTCAACCTTTTCGATGATCTGGTCCTCCTTGCAGGAGGTGAATCTGTATATTTTGGAGAAGCAACTATGGCTGTAAAGTTCTTTGCTGATGCAGGGTTCCCTTGTCCAACAAGAAAGAATCCTCCTGAGCATTTCCTTCGTTGCGTTAACTCGGAGTTTGATAGTGTTGCAGCCTTAATGCAGTCCAAAAAGGAAGCCTCATCTTCATGGAATTCTCTAATGAAGATGACAACAGAAGAGATTAAATCAGAACTCATAAAGTACTACAGGAATTCCATTCAGTCAGAAAATGCAAGGAAAAAAATCAGAGAAATCAAACAAAGTGAAGAACCTTTAGTTGAGAAGATATATGATACCAGCAGGCTGAAGCAGCTATGCACATTGACAAATAGATCAATTCTAAATATGACCAGAGACATTGGTTACTATTGGTTAAGGATTGTATTCTATATCTTGATATCAGTGAGTGCTGGTTTTCTTCTTTTCAACATAGGAACAAGTAATGAAGCAATCTTAACTAGAGGCAAGTGTGATGGATTCATCGTTGGCTTGATGATCTTCTTATGTTTAGGCGGCGTACCCTTTTACCATGAGGAATTAAAGGTCTTCAAACGTGAAAGATTTGGAAATCATTACGGCGAAGCCATGTTTGTGCTGTCACATTTCCTCTCATCACTCCCTTTTGTTCTTGCAATTTCCCTCTCTTCAGGAACAATACTTTACCACATGGTGAACTTTCATCCAGGCTTCTCTCATTACTGCTATTTTTGCATGAATATATTTTGCCTCATTGCTGTCACAGAAGGCTGCACATTATTCTTTGCAGCACTTGCCCCCGACCTATTGGTAGCAATGGGAACTGCAACCGGTGCCATTGTATTCATGATGGTGCCATCTAATATATTCAGAAGCCTAGCAGACCTTCCAAAATTCTTTTGGCGCTATCCAATGTCCTATATCAGCTACATTACATGGTCAATACAGGGTCAGTTCAAGAATGACCTGATAGGTCTTGAATTTGAACCACAGGTGCCCGGGGGTACCAAGATAAAGGGTGAAGAGATACTTCATGATATGTTTGGAATTCGAAATGATTACTCAAAATGGTGGGACTTAGGAGTTCTGGTTTTGTTCTTGATATGTTATAGGTTGCTCTTTTTCTTGGTTCTTAAGCACAAGGAGAGAGTTACATCATTATTACACACCAAAAGAACTATCCCAGACATTTTACTCAGAAGATCCTCATTGAAGAACAAATATATCTCTTCGAAGCAACGTCAATCCCTGCATCCTTTGTCAGCTCAAGAGGGTCTTTACTCTCCAATTTCTTAA 2019 0.4032 MFPTKMDLLANVAVENKRRVCLVWEDLTVVASSVNNSPKRELLKGLSGYAEPNRIMALIGPSGSGKSTVLAALAGILPTNVSMTGNVLLNGTTRSTGCRDISYVTQEDYFLGTLTVKETLTYAAHLRLPADMTKNEIDKVVTKILAEMGLQDSADSRLGNWHLRGISSGEKRRLSIGIEILTQPHVMFLDEPTSGLDSAAAFYVISSLSNIAHDGRIVICSIHQPSGEVFNLFDDLVLLAGGESVYFGEATMAVKFFADAGFPCPTRKNPPEHFLRCVNSEFDSVAALMQSKKEASSSWNSLMKMTTEEIKSELIKYYRNSIQSENARKKIREIKQSEEPLVEKIYDTSRLKQLCTLTNRSILNMTRDIGYYWLRIVFYILISVSAGFLLFNIGTSNEAILTRGKCDGFIVGLMIFLCLGGVPFYHEELKVFKRERFGNHYGEAMFVLSHFLSSLPFVLAISLSSGTILYHMVNFHPGFSHYCYFCMNIFCLIAVTEGCTLFFAALAPDLLVAMGTATGAIVFMMVPSNIFRSLADLPKFFWRYPMSYISYITWSIQGQFKNDLIGLEFEPQVPGGTKIKGEEILHDMFGIRNDYSKWWDLGVLVLFLICYRLLFFLVLKHKERVTSLLHTKRTIPDILLRRSSLKNKYISSKQRQSLHPLSAQEGLYSPIS* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1158 672 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 266 IPR003439 GO:0005524
Gso3g1158 672 Pfam ABC-2 type transporter 223 347 IPR043926 GO:0140359
Gso3g1158 672 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 21 630 - -
Gso3g1158 672 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 21 630 - -
Gso3g1158 672 SMART AAA_5 52 251 IPR003593 -
Gso3g1158 672 Pfam ABC-2 type transporter 353 558 IPR013525 GO:0016020|GO:0140359
Gso3g1158 672 Gene3D - 12 259 IPR027417 -
Gso3g1158 672 Pfam ABC transporter 43 194 IPR003439 GO:0005524
Gso3g1158 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 252 IPR027417 -
Gso3g1158 672 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1158 Gso-Chr3 37002912 37008064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1158 38 235 Calmodulin-binding Proteins AT2G36910 27.273 3.78e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1158 - K05681 aip:107646291 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1157 19 39813764 39818282 Gso3g1158 3 37002912 37008064 GST