Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1148 ATGGAGAAAACTCTCCTCAAGGATTTCGAGCTCCAGCACAAAAATCCCTCCGTCGAAGCCCTCCGCCGATGGAGATCCGCCGTCACTCTCGTCAAAAACCACCGCCGCCGCTTCCGCATGGTCGCCGATCTCGACAAGCGCGTCCAAGCCGAGCAGATTAAGCAGGGGATCAAGGAAAAAATTCGAATTGCTCTCTACGTTCAAAAGGCAGCATTACAATTTATTGATGCTGGTAATCGAGTTGAGTACAAACTATCAAGTGAGGCAAGAGATTCTGGTTTTGGTATTCATCCAGATGAGATTGCATCTATTGTTCGTGGTCATGATAACAAGACCTTAAATGATATTGGTGGAGTTGAATCCATTGCAAGGAAATTGTTAGTTTCGGTTGATGGAGGTGTCAGCGAAGAGAGTATAAATAGCAGACAACAGATTTATGGATTCAATCGTTATACCGAAAAACCTTCTAGATCGTTCCTGATGTTTGTGTGGGATGCATTGCAGGACTTAACTCTAATCATTCTCATGGTTTGTGCTGTAGTTTCTATAGTTATAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACTTATGATGGTGTGGGAATCATACTCAGTATATTCTTGGTTGTCGTTGTTACAGCTGTCAGTGATTACAAGCAGTCCCTGCAGTTCAGAGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCAATAGAGATGGGAAAAGACAGAAGATCTCAATTTATGATATAGTAGTCGGTGATGTTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGATTTTTTTATCAGGATACTCTTTGCTTATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATATAACTGAAGAAAAACCTTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAGACTCTAAACGAGGGAGGAGAGGATGAAACCCCATTGCAGGTTAAATTAAATGGAGTAGCTACTATTATTGGTAAAATTGGTTTGACATTTGCCATTCTGACATTTGTAGTGTTGACAGTTAGGTTTGTGGTCGAAAAAGCGCTTCATGGTGACTTTGCCAGTTGGTCTTCAGATGATGCAAAGAAGTTACTGGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCAGTTCCTGAAGGATTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAACTAATGAATGACAAGGCACTTGTAAGGCATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACAAAATGGTGGTTACTAAAGCATGGATATGCGAAAAAGCCATGCAGATAAAAGGTACTGAGAGTGCAAACGAACTGAAAACATGTACATCTGAAGGAGTTATAAACATCCTTTTGCAGGCTATATTTCAAAACACTTCTGCTGAAGTAGTTAAGGATGATAAAAATGGAAAGGACACAATATTGGGAACCCCAACAGAATCAGCATTATTGGAATTTGGATGCCTTTTGAGTGCTGATTTTGATGCGTATGCACAGCGTAGAGAGTATAAGATACTCAAAGTTGAGCCATTCAATTCAGTCCGAAAGAAAATGTCCGTGCTTGTGGGTCTTCCTAATGGAGGAGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAACTATTGATTGCAATGGGGAAGTTGTTGATCTTCCTGAAGACGGGGCAAATAATGTCTCTGATGTTATAAATGCCTTTGCCTCTGAAGCTTTGAGAACTATTTGTTTGGCCTTCAAAGAGATAAATGAAACCCATGAACCCAACAGCATTCCTGATAGTGGCTATACTCTAATAGCCTTAGTAGGAATCAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGTATGGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATAAATACAGCTAAAGCTATAGCTAAAGAATGTGGTTTACTTACCGAGGGTGGTCTAGCCATAGAAGGTCCAGATTTCCGTGACTTGTCTCCTGAGCAAATGAAGGATGTCATACCAAGAATCCAGGTGATGGCACGATCCTTACCGCTCGACAAGCATAAGTTAGTTACCAATTTGAGGAAAATGTTCGGTGAGGTTGTTGCTGTTACTGGCGATGGAACTAATGATGCCCCTGCACTGCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTCGCTAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACGACTATTGTCAATGTTGTCAAATGGGGACGTGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAACTTCATTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATCATGGACACTCTTGGGGCATTAGCCCTGGCTACTGAACCTCCTAACGATGGACTTTTGAAAAGACCCCCAGTTGCAAGAGGAGCAAACTTTATCACCAAACCTATGTGGAGGAATATCATAGGTCAAAGCATATATCAATTAATTATCCTTGGGATTCTAAATTTTGATGGGAAGAGGCTGCTCGGACTTGGTGGTTCAGATTCAACAAAAATACTCAACACGTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTATGGCGATAATTTTCGCCACCGCTGCATTTCAAGTGGTGATAGTTGAATTCCTTGGAACGTTTGCCAGCACTGTGCCTCTAAACTGGCAATTCTGGTTACTAAGTGTGGTAATCGGAGCATTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAGAGATGCTAGTAAGCAGCACCATGATGGTTATGAGGCACTGCCATCTGGTCCGGAGCTGGCATAA 3114 0.4171 MEKTLLKDFELQHKNPSVEALRRWRSAVTLVKNHRRRFRMVADLDKRVQAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYKLSSEARDSGFGIHPDEIASIVRGHDNKTLNDIGGVESIARKLLVSVDGGVSEESINSRQQIYGFNRYTEKPSRSFLMFVWDALQDLTLIILMVCAVVSIVIGIATEGWPKGTYDGVGIILSIFLVVVVTAVSDYKQSLQFRDLDKEKKKIFVQVNRDGKRQKISIYDIVVGDVVHLSTGDQVPADGIFLSGYSLLIDESSLSGESEPVNITEEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLTFAILTFVVLTVRFVVEKALHGDFASWSSDDAKKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNKMVVTKAWICEKAMQIKGTESANELKTCTSEGVINILLQAIFQNTSAEVVKDDKNGKDTILGTPTESALLEFGCLLSADFDAYAQRREYKILKVEPFNSVRKKMSVLVGLPNGGVRAFCKGASEIILKMCDKTIDCNGEVVDLPEDGANNVSDVINAFASEALRTICLAFKEINETHEPNSIPDSGYTLIALVGIKDPVRPGVKEAVQTCMAAGITIRMVTGDNINTAKAIAKECGLLTEGGLAIEGPDFRDLSPEQMKDVIPRIQVMARSLPLDKHKLVTNLRKMFGEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVVKWGRAVYINIQKFVQFQLTVNVVALVINFISACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGANFITKPMWRNIIGQSIYQLIILGILNFDGKRLLGLGGSDSTKILNTLIFNSFVFCQVFNEINSRDIDKINIFRGMFDSWIFMAIIFATAAFQVVIVEFLGTFASTVPLNWQFWLLSVVIGAFSMPIAAILKCIPVERDASKQHHDGYEALPSGPELA* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1148 1037 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 48 IPR024750 GO:0005516
Gso3g1148 1037 PANTHER CATION TRANSPORTING ATPASE 45 1021 - -
Gso3g1148 1037 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 663 IPR023299 GO:0000166
Gso3g1148 1037 SMART Cation_ATPase_N_a_2 115 187 IPR004014 -
Gso3g1148 1037 Pfam Cation transporting ATPase, C-terminus 839 1012 IPR006068 -
Gso3g1148 1037 Gene3D - 133 333 - -
Gso3g1148 1037 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 721 842 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso3g1148 1037 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 389 474 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso3g1148 1037 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 202 372 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso3g1148 1037 Pfam E1-E2 ATPase 236 428 - -
Gso3g1148 1037 SFLD p-type atpase 432 806 IPR044492 -
Gso3g1148 1037 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1015 IPR023298 -
Gso3g1148 1037 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso3g1148 1037 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso3g1148 1037 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso3g1148 1037 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1016 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso3g1148 1037 Gene3D - 165 1013 - -
Gso3g1148 1037 Gene3D - 447 799 IPR023214 -
Gso3g1148 1037 PANTHER CALCIUM-TRANSPORTING ATPASE 45 1021 - -
Gso3g1148 1037 SUPERFAMILY HAD-like 449 859 IPR036412 -
Gso3g1148 1037 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Gso3g1148 1037 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Gso3g1148 1037 Gene3D - 460 658 IPR023299 GO:0000166
Gso3g1148 1037 CDD P-type_ATPase_Ca_PMCA-like 139 887 - -
Gso3g1148 1037 SFLD C1.7: P-type atpase like 432 806 - -
Gso3g1148 1037 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Gso3g1148 1037 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Gso3g1148 1037 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Gso3g1148 1037 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Gso3g1148 1037 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Gso3g1148 1037 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Gso3g1148 1037 Gene3D - 16 77 - -
Gso3g1148 1037 Pfam Cation transporter/ATPase, N-terminus 117 182 IPR004014 -
Gso3g1148 1037 Pfam haloacid dehalogenase-like hydrolase 448 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1148 Gso-Chr3 36853050 36865778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1148 57 1034 Primary Pumps ATPases AT3G57330 73.620 0.0 1478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1148 K01537 - gmx:100798481 1997.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1148 3 36853050 36865778 Gso3g1148 3 36853050 36865778 ECH
Gso19g1145 19 39669139 39680491 Gso3g1148 3 36853050 36865778 GST
Gso3g1148 3 36853050 36865778 Gso2g1587 2 35495331 35507547 PCT
Gso3g1148 3 36853050 36865778 Gso10g0998 10 25453940 25465137 PCT
Gso2g1587 2 35495331 35507547 Gso3g1148 3 36853050 36865778 PCT
Gso10g0998 10 25453940 25465137 Gso3g1148 3 36853050 36865778 PCT