Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1144 ATGGATCACAGACCGAAATCCAAGGAGTCACTCTCTTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATAATGATTTTGATTATTACGGAAATAGTAGTCAGGATGAGAGCAGAGACAGCCAAGGTGTGGGGATTGCAAATCACAGTAATGGGAATGTGCATGAAAAGGAGGTGAATTTGTTCAAGAAGAGGAGGTGGTCTCTAAACAGTGACAACGAGGAGAAGAGCAGTTTTTACGGGACACACATGACGGAGGAGCGATATCGATCAATGCTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTTAAGGGTACCTTGAATAGTCCTGCCCAAAATCAGGCTGCTGTTCCACTTGTGAAAAGCAACACGGGATTAAAAGCTCACAAGTCAGGGAATGAGCGCAGGGGAGGAGGATTACATGTGGCGGAGAGTACATCGGAATGGATGAATGATTCTGGTTCTCAAAAACCTGGAAACTACCGCAATGCAGATTTCTCGCCGCAATATGGCACTGATAGGATTATGTATGAACCTGCATCTTTGGATATCGGGGATGGAATCATTTACAAGATCCCTCCAGTCTATGATAAGTTGGCTGGAGCTCTAAACCTCCCAAGCTGCTCAGATATCCATGTTGAGGATTTATACTTAAAGGGTACTTTGGATTTGGGCTCCTTGGCTGAAATGATGGCTGCTGATAAAAGATTTGGGAACAGAAACCGAGCAGGCATGGGAGAAGCAATACCACAATTTGAATCACTGCAGGCACGACTGAAGGTCATGTCAGCTTCTAATTCGGCTCGTAAGTTCAGTCTGAAAATGTCTGATGTTGATTTGAATTCCTCCATTCCGGAGGGGGCAGCGGGAAGCATAAGGCGATCTATTTTGTCTGAGGGTGGAGTATTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAGCAAAAGGTGAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGATGTGGAAAAGTTTGGGCAAATATTGTAAGAAGAGACATACCAAAGCATCATAGGAACTTCACTATTTTTCATCGAAAGCAGCTCATTGATGCCAAGAGGGTCTCAGAAACTTGTCAAAGAGAGGTCAGAATGAAAGTTAGTAGATCCCTTAAATGGACAAGGACTGCCAGTATGCGCACCCGTAAACTAGCTAGAGACATGTTACTGTTCTGGAAACGAATAGACAAGGAGATGACAGAAGTGAGGAAGAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAGGCAAAGAGACAGCAGCAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAACTTTACCCAAGGAAGATGAAGATGCAGATGATCAAGATGCACTGATCGACTCTTCAGATGCTGTGCCCGATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTCTAAGCAGAAAATGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGCCAAGCTGGTGAAACTGATTCACTTCCACCAGATGTTGCTGGAGCGAGTAATATTGATTTGCAAACGCCCTCCACCATGCCAGTGGCATCCACAGTTCGGACACCTGAATTATTTAAAGGTGTTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTCGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTAGCGGATGAGATGGGACTTGGAAAGACCATTCAAGCCATGGCTTTTTTGGCCCATTTAGCTGAGGAAAAAAATATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCATATTGGGGTGGGCTTTCAGAGCGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTATCCGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTGCAACCAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCCATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTAAATGAGCACCAACTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGATTTCTGAGCTTACTACAAAAACTGAGGTTACTGTGCATTGTAAGCTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAACGAGAAGAGAATTCTGAATTTAATGAACATCGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTCGAAAGGAGTGAGGGAAGCACGTACCTTTACTTTGGAGAGATTCCGAATTCCCTTCCACCTCCTCCATTTGGGGAGATGGAGGATGTATATTATTCCGGTGGTCACAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATTATACAAAGTTCTGAAACTCTCAGTTCAGCTGTTGGTCGTGGTGTCTCCAGAGAATCTTTTCATAAACATTTTAATATTTTTAGACCGGAAAATGTTTATCGGTCTGTCTTCTCAGAAGATATGTGCAGTAAAAGTGGAAATTTTGGTTTTACCCATATGATGAATTTGTCTCCACATGAAGTGACATTTCTAGCTACTGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGATGGGAACAAAAATTCATTGATGAAGCTGTAGACTTTCTAATGGAGACCATAGATGATGATCCAGAATGTAGTTACCTTGAGAAAGAAAAAGTGAGAGCAGTTACGCGAATGTTATTGGTGCCATCAAGATCTGAGACCCAGTTTCTTCAAAAAAAATGGCAAACTGGACCCAGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCCCATCAAGATAGGGTGTTATCAAATGCCAGGCTTCTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCCCCAATTGGTGCTCACTGCTCAGATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCTGGGTTAAGAGGTTGCTTGTGGGGTTTGCACGTACATCTGATAATAATGTGCCTAGAAAGCCAGATAGTCCTCATCATTTAATTCAAGAGATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTTCAGTTAACGTACAGTATTTTTGGGTCTTCTCCACCGATGCGGAATTTTGACCCTGCGAAATTGCTCACTGACTCTGGAAAGCTCCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCATCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGTTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAGGTATTTTAGACTTGATGGATCATCCACTATTCAGGACCGCAGAGACATGGTCAAAGACTTTCAGCATAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCTAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTCGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCATTGCTTCTAGATGATGTTCAATTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAGAGGTATTCGGGTAAATGAAGACGGTGATGCATCAATGGAAGATCTAACAAGCTCTGTAGCCCAGGGTACCTCAGATAATGATCTTTCCATGGATCCAGAGGGTTCAAAGTCTAGTAATAAAAAGAGAAAAGCTTTCTCAGATAAGCCAACTTCAAGGCCAATGAATTCCCAAAAGATGAGTGAATTTAGTACTACGCCTATGGACGATGAATTGGATGTTGTTGATCCAGTGGGTCAGAAACCCAAGAGACCCAAGAGGATAAAGAAGAATGTGAATGAAAAGTTTGAAGATGCTTTTACTGGGATTGCTGCCCTGATCCCAGAGCAGACCCAATTTCCACCTCCACCAAGCGATTTTAGTGCCGGGGGTTCTAAAGCAGAATCAGGCCAAGACAACTGA 4599 0.4192 MDHRPKSKESLSYSTLFNLESLMNFQLPEQDNDFDYYGNSSQDESRDSQGVGIANHSNGNVHEKEVNLFKKRRWSLNSDNEEKSSFYGTHMTEERYRSMLGEHIQKYKRRFKGTLNSPAQNQAAVPLVKSNTGLKAHKSGNERRGGGLHVAESTSEWMNDSGSQKPGNYRNADFSPQYGTDRIMYEPASLDIGDGIIYKIPPVYDKLAGALNLPSCSDIHVEDLYLKGTLDLGSLAEMMAADKRFGNRNRAGMGEAIPQFESLQARLKVMSASNSARKFSLKMSDVDLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERCGKVWANIVRRDIPKHHRNFTIFHRKQLIDAKRVSETCQREVRMKVSRSLKWTRTASMRTRKLARDMLLFWKRIDKEMTEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPKEDEDADDQDALIDSSDAVPDEEEDPEEAELKKEALKAAQEAVSKQKMLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSATSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGEMEDVYYSGGHNPISYEIPKLVYQEIIQSSETLSSAVGRGVSRESFHKHFNIFRPENVYRSVFSEDMCSKSGNFGFTHMMNLSPHEVTFLATGSFMERLLFSMMRWEQKFIDEAVDFLMETIDDDPECSYLEKEKVRAVTRMLLVPSRSETQFLQKKWQTGPSHAPFEALVVPHQDRVLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLLVGFARTSDNNVPRKPDSPHHLIQEIDSELPVSQPALQLTYSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVKDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPMRGIRVNEDGDASMEDLTSSVAQGTSDNDLSMDPEGSKSSNKKRKAFSDKPTSRPMNSQKMSEFSTTPMDDELDVVDPVGQKPKRPKRIKKNVNEKFEDAFTGIAALIPEQTQFPPPPSDFSAGGSKAESGQDN* 1533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1144 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 819 IPR027417 -
Gso3g1144 1532 CDD SF2_C_SNF 1197 1329 - -
Gso3g1144 1532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1209 1393 IPR001650 -
Gso3g1144 1532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 603 774 IPR014001 -
Gso3g1144 1532 MobiDBLite consensus disorder prediction 1507 1532 - -
Gso3g1144 1532 MobiDBLite consensus disorder prediction 1449 1464 - -
Gso3g1144 1532 Gene3D - 829 898 IPR027417 -
Gso3g1144 1532 Pfam SNF2-related domain 606 893 IPR000330 GO:0005524|GO:0140658
Gso3g1144 1532 Gene3D - 1177 1427 IPR027417 -
Gso3g1144 1532 Pfam Helicase conserved C-terminal domain 1209 1318 IPR001650 -
Gso3g1144 1532 SMART helicmild6 1235 1318 IPR001650 -
Gso3g1144 1532 MobiDBLite consensus disorder prediction 1411 1433 - -
Gso3g1144 1532 Pfam DNA-binding domain 351 480 IPR020838 GO:0003677
Gso3g1144 1532 Coils Coil 428 467 - -
Gso3g1144 1532 MobiDBLite consensus disorder prediction 1389 1491 - -
Gso3g1144 1532 Gene3D - 587 828 IPR038718 -
Gso3g1144 1532 MobiDBLite consensus disorder prediction 1434 1448 - -
Gso3g1144 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 1385 IPR027417 -
Gso3g1144 1532 MobiDBLite consensus disorder prediction 1389 1410 - -
Gso3g1144 1532 MobiDBLite consensus disorder prediction 33 59 - -
Gso3g1144 1532 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1486 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Gso3g1144 1532 PANTHER HELICASE SRCAP-RELATED 16 1486 - -
Gso3g1144 1532 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Gso3g1144 1532 SMART ultradead3 587 782 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1144 Gso-Chr3 36806132 36818799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1144 612 901 RAD5 or RAD16-like Gene Family AT5G43530 29.167 2.97e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso3g1144 SNF2_N 4.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1144 K11665 - gmx:100810344 2960.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1144 3 36806132 36818799 Gso3g1144 3 36806132 36818799 ECH
Gso19g1141 19 39624038 39636096 Gso3g1144 3 36806132 36818799 GST